用比较分子动力学方法裁剪左旋蔗糖酶产物大小。

IF 3.4 3区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Zhiwei Li, Tong Bao, Kaiwen Chen, Chao Hu, Xinyu Zhang, Xueqin Hu, Jingwen Yang, Hongbin Zhang
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引用次数: 0

摘要

莱文被广泛用作食品添加剂。其分子量对其利用有显著影响。枯草芽孢杆菌(Bacillus subtilis, Bs-SacB)和巨型葡萄球菌(Priestia megaterium, Pm-SacB)的左万蔗糖酶产量不同。为了深入研究这两种酶产物分子量差异的分子基础,我们对Bs-SacB和Pm-SacB活性位点周围的8个环进行了重点研究,并确定了Loop3和loop4是改变Bs-SacB产物分子量的关键决定因素。随后,利用突变能量分析和非同源替代策略,我们对loop3和loop4进行了定制修饰,得到了具有不同分子量谱的突变酶谱,包括F182Y(3698 Da)、CYTI(3093 Da)、3-Pbl(2776 Da)、4-Bml(1845 Da)和F182K(1571 Da)。本研究为改变产物分子量提供了一种新的比较分子动力学方法,并成功应用于左旋蔗糖酶的改性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Tailoring of levansucrase product size by a comparative molecular dynamics approach.

Levan is widely used as food additives. Its utilization is significantly influenced by its molecular weight. Bacillus subtilis levansucrase (Bs-SacB) and Priestia megaterium levansucrase (Pm-SacB) yield levan of different weights. To delve deeper into the molecular underpinnings of the molecular weight disparity between the products of these two enzymes, we conducted a focused study on the eight loops surrounding the active sites of Bs-SacB and Pm-SacB and identified Loop3 and loop4 as critical determinants in changing the molecular weight of Bs-SacB 's products. Subsequently, leveraging mutation energy analysis and non-homologous substitution strategies, we crafted tailored modifications in loop3 and loop4, yielding a spectrum of mutant enzymes that exhibit diverse molecular weight profiles including F182Y (3698 Da), CYTI (3093 Da), 3-Pbl (2776 Da), 4-Bml (1845 Da), and F182K (1571 Da). This research provide a novel comparative molecular dynamics approach to change product molecular weight and it is successfully applied in the modification of levansucrase.

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来源期刊
Enzyme and Microbial Technology
Enzyme and Microbial Technology 生物-生物工程与应用微生物
CiteScore
7.60
自引率
5.90%
发文量
142
审稿时长
38 days
期刊介绍: Enzyme and Microbial Technology is an international, peer-reviewed journal publishing original research and reviews, of biotechnological significance and novelty, on basic and applied aspects of the science and technology of processes involving the use of enzymes, micro-organisms, animal cells and plant cells. We especially encourage submissions on: Biocatalysis and the use of Directed Evolution in Synthetic Biology and Biotechnology Biotechnological Production of New Bioactive Molecules, Biomaterials, Biopharmaceuticals, and Biofuels New Imaging Techniques and Biosensors, especially as applicable to Healthcare and Systems Biology New Biotechnological Approaches in Genomics, Proteomics and Metabolomics Metabolic Engineering, Biomolecular Engineering and Nanobiotechnology Manuscripts which report isolation, purification, immobilization or utilization of organisms or enzymes which are already well-described in the literature are not suitable for publication in EMT, unless their primary purpose is to report significant new findings or approaches which are of broad biotechnological importance. Similarly, manuscripts which report optimization studies on well-established processes are inappropriate. EMT does not accept papers dealing with mathematical modeling unless they report significant, new experimental data.
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