脂溶性维生素在双棕榈酰磷脂酰胆碱(DPPC)双分子层中的吸收研究。

IF 2.7 4区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS
Chanya Phromchaloem , Narissara Na Nakorn , Laksamee Muensritharam , Warabhorn Boonyarat
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引用次数: 0

摘要

视黄醇、α-生育酚和叶绿醌(维生素A、E和K)在大多数植物的叶绿体和叶片中含量很高。它们是脂溶性维生素,吸收与其他膳食脂类相似。由于视黄醇、α-生育酚和叶绿醌吸收的分子机制尚不清楚,本研究旨在利用分子动力学(MD)模拟研究这些维生素在水/膜界面的分布。维生素中羟基的结构和变化是研究吸收过程的关键。确定了维生素的结合方向、有利的结合位点、相互作用和扩散。所有的维生素都会自发地穿透脂质双分子层。根据模拟,DPPC在吸收过程中与磷酸基形成氢键相互作用需要视黄醇和生育酚的羟基。因此,视黄醇在结构尾部具有-OH基团,具有视黄醇中最高的结构柔韧性,向脂膜倾斜的角度最宽,扩散系数最高。最后,视黄醇将其头部基团插入脂质双分子层的碳氢化合物核心。在α-生育酚的情况下,头部基团的羟基产生α-生育酚,α-生育酚通过脂膜的一个小叶,并在相反的小叶中稳定下来。有趣的是,叶绿醌是一种没有羟基的分子,稳定在磷酸基附近,不形成氢键。叶绿醌的头基团以120°的精确倾斜角度穿透。叶绿醌在凝胶相DPPC内具有较低的扩散系数。MD模拟揭示了三种脂溶性维生素在通过磷脂膜吸收过程中的特性。这一信息对改善药物沿膜的吸收有指导作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Absorption study of fat-soluble vitamins into dipalmitoylphosphatidylcholine (DPPC) bilayer by MD simulations

Absorption study of fat-soluble vitamins into dipalmitoylphosphatidylcholine (DPPC) bilayer by MD simulations
Retinol, α-tocopherol and phylloquinone (vitamins A, E, and K) are presented in high concentrations within the chloroplast and leaves of most plants. They are fat-soluble vitamins and absorb similarly to other dietary lipids. Because the molecular mechanism of retinol, α-tocopherol, and phylloquinone absorption is still unknown, this work aims to investigate the distribution of these vitamins at the water/membrane interface using molecular dynamics (MD) simulations. Structures and variations of the hydroxyl group in vitamins are the keys to the investigation of the absorption process. Binding orientations, favorable binding sites, interactions, and diffusion of vitamins were identified. All vitamins spontaneously penetrate the lipid bilayer. According to simulations, the formation of the hydrogen bonding interaction with the phosphate group of DPPC during absorption requires a hydroxyl group of retinol and tocopherol. Therefore, retinol has –OH group at the tail of the structure and shows the highest structural flexibility of retinol, broadest tilt angle toward the lipid membrane, and highest diffusion coefficient. Finally, retinol plugs its head group into the hydrocarbon core of the lipid bilayer. In the case of α-tocopherol, the hydroxyl at the head group produces α-tocopherol, which moves through one leaflet of the lipid membrane and is stabilized in the opposite leaflet. Interestingly, phylloquinone, a molecule without a hydroxyl group, stabilizes close to a phosphate group without hydrogen bond formation. The head group of phylloquinone penetrates at a precise tilting angle of 120°. High retention of phylloquinone inside gel-phase DPPC is suggested by its low diffusion coefficient. MD simulations reveal the characteristics of three fat-soluble vitamins during absorption through the phospholipid membrane. This information is useful as a guideline to improve the absorption of drugs along the membrane.
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来源期刊
Journal of molecular graphics & modelling
Journal of molecular graphics & modelling 生物-计算机:跨学科应用
CiteScore
5.50
自引率
6.90%
发文量
216
审稿时长
35 days
期刊介绍: The Journal of Molecular Graphics and Modelling is devoted to the publication of papers on the uses of computers in theoretical investigations of molecular structure, function, interaction, and design. The scope of the journal includes all aspects of molecular modeling and computational chemistry, including, for instance, the study of molecular shape and properties, molecular simulations, protein and polymer engineering, drug design, materials design, structure-activity and structure-property relationships, database mining, and compound library design. As a primary research journal, JMGM seeks to bring new knowledge to the attention of our readers. As such, submissions to the journal need to not only report results, but must draw conclusions and explore implications of the work presented. Authors are strongly encouraged to bear this in mind when preparing manuscripts. Routine applications of standard modelling approaches, providing only very limited new scientific insight, will not meet our criteria for publication. Reproducibility of reported calculations is an important issue. Wherever possible, we urge authors to enhance their papers with Supplementary Data, for example, in QSAR studies machine-readable versions of molecular datasets or in the development of new force-field parameters versions of the topology and force field parameter files. Routine applications of existing methods that do not lead to genuinely new insight will not be considered.
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