不同人群对 SARS-CoV-2 易感性的主要关注点--Furin SNPs 的变异:内模拟方法

IF 2.3 Q3 BIOCHEMICAL RESEARCH METHODS
Bioinformatics and Biology Insights Pub Date : 2024-12-18 eCollection Date: 2024-01-01 DOI:10.1177/11779322241306388
Md Nasir Uddin, Md Arzo Mia, Yasmin Akter, Mohammad Al-Baruni Chowdhury, Md Hadisur Rahman, Hafsa Siddiqua, Umme Salma Shathi, Abdullah Al-Mamun, Farida Siddika, Lolo Wal Marzan
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引用次数: 0

摘要

由严重急性呼吸综合征冠状病毒-2 (SARS-CoV-2)引起的COVID-19在全球范围内产生了不利影响,因为它引发了全球大流行,造成数百万人死亡。这种病毒具有刺突蛋白,这种刺突蛋白被哺乳动物肺部或呼吸细胞产生的类似呋喃的蛋白酶裂解或激活,从而进入哺乳动物体内。在SARS-CoV-2中添加Furin切割位点使其成为比其祖先的病毒更具传染性和新兴的病毒。利用GTEx、KEGG、GO、NCBI、polyphen2、SNAP2、PANTHER、Hidden Markov Models (Fathmm)、Phd-single-nucleotide polymorphism (SNP)、I-TASSER、Modpred、Phobius、SIFT、iPTREE-STAB和PROVEAN等生物信息学工具,对冠状病毒刺突蛋白的系统发育关系进行了分析并绘制了Furin识别基序。本研究发现,在某些地区,Furin snp与SARS-CoV-2易感性有一定关系。而在其他地区,这种影响可以忽略不计。最后,我们的研究表明,Furin snp与对SARS-CoV-2的易感性有很强的关系。由于它有助于切割病毒的刺突蛋白,因此可以针对特定部位进行抑制,以阻止SARS-CoV-2进入人体。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Variations in Furin SNPs, a Major Concern of SARS-CoV-2 Susceptibility Among Different Populations: An In-Silico Approach.

COVID-19 caused by severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) had an adverse effect globally because it caused a global pandemic with several million deaths. This virus possesses spike protein that is cleaved or activated by Furin-like protease enzymes occurring by mammalian lung or respiratory cells to enter the mammalian body. The addition of the Furin cleavage site in SARS-CoV-2 makes it a more infectious and emerging virus than its ancestor's viruses. Phylogenetic relationships of coronavirus spike proteins have analyzed and mapped Furin recognition motif on the tree using bioinformatics tools such as GTEx, KEGG, GO, NCBI, PolyPhen-2, SNAP2, PANTHER, Hidden Markov Models (Fathmm), Phd-single-nucleotide polymorphism (SNP), I-TASSER, Modpred, Phobius, SIFT, iPTREE-STAB, and PROVEAN. During this study, it has been found that in certain regions, Furin SNPs have some relation with the susceptibility to SARS-CoV-2. Whereas in other regions, the effects are very negligible. Finally, our study demonstrates that Furin SNPs have a strong relationship with susceptibility to SARS-CoV-2. As it helps to cleave the spike protein of the virus, thus it can be targeted to inhibit at a particular site to prevent the SARS-CoV-2 from the entrance into the body.

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来源期刊
Bioinformatics and Biology Insights
Bioinformatics and Biology Insights BIOCHEMICAL RESEARCH METHODS-
CiteScore
6.80
自引率
1.70%
发文量
36
审稿时长
8 weeks
期刊介绍: Bioinformatics and Biology Insights is an open access, peer-reviewed journal that considers articles on bioinformatics methods and their applications which must pertain to biological insights. All papers should be easily amenable to biologists and as such help bridge the gap between theories and applications.
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