确定与乳腺癌预后和免疫微环境相关的新的二硫中毒相关lncRNA特征。

IF 1.5 4区 医学 Q4 ONCOLOGY
Translational cancer research Pub Date : 2024-11-30 Epub Date: 2024-11-21 DOI:10.21037/tcr-24-513
Yifan Zheng, Yufeng Lin, Yongcheng Zhang, Shangjie Liu, Yongxia Yang, Wenbin Huang
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引用次数: 0

摘要

背景:二硫化物中毒是一种由二硫化物应激引发的细胞死亡的新形式,可能对乳腺癌(BC)的发病机制有重要意义。然而,在BC中发现与二硫塌陷相关的长链非编码rna (lncRNAs)的研究尚未报道。本研究旨在探讨BC中与二硫中毒相关的lncrna的预后潜力。方法:从癌症基因组图谱(TCGA)数据库中获取BC患者的rna测序数据和临床信息。通过共表达分析鉴定与双翘症相关的lncrna。随后,使用单变量Cox和最小绝对收缩和选择算子(LASSO)分析构建了由10个lncrna组成的风险签名,并验证了其预测能力。结果:发现风险标志是BC患者的独立预后因素。值得注意的是,由风险标记定义的两个亚组表现出不同的突变基因谱,风险评分与肿瘤突变负担(TMB)显著相关。此外,单样本基因集富集分析(ssGSEA)和免疫检查点分析表明,预测的性状与BC患者的免疫状态显著相关。此外,55种潜在的抗癌药物被鉴定出与该特征相关。结论:在本研究中,我们成功建立了基于二硫中毒相关lncrna的预后模型,提高了预测BC患者预后的准确性。该模型也为BC的治疗提供了潜在的靶点和理论基础,为进一步研究二硫塌陷相关lncrna在BC中的功能作用奠定了坚实的基础。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Determining new disulfidptosis-associated lncRNA signatures pertinent to breast cancer prognosis and immunological microenvironment.

Background: Disulfidptosis is a novel form of cell death triggered by disulfide stress that may have important implications for breast cancer (BC) pathogenesis. Nevertheless, studies identifying disulfidptosis-associated long non-coding RNAs (lncRNAs) in BC have not been reported. This study aimed to investigate the prognostic potential of disulfidptosis-related lncRNAs in BC.

Methods: RNA-sequencing data and clinical information of BC patients were obtained from The Cancer Genome Atlas (TCGA) database. The lncRNAs associated with disulfidptosis were identified through co-expression analysis. Subsequently, a risk signature consisting of 10 lncRNAs was constructed using univariate Cox and least absolute shrinkage and selection operator (LASSO) analyses, and its predictive power was validated.

Results: The risk signature was found to be an independent prognostic factor for BC patients. Notably, the two subgroups defined by the risk signature exhibited different mutant gene profiles, and risk scores were significantly correlated with tumor mutation burden (TMB). Additionally, single-sample gene set enrichment analysis (ssGSEA) and immune checkpoint analyses indicated that the predicted trait was significantly associated with the immune status of BC patients. Furthermore, 55 potential anticancer drugs were identified that were associated with the signature.

Conclusions: In this study, we successfully developed a prognostic model based on disulfidptosis-related lncRNAs, which enhances the accuracy of predicting the prognosis of BC patients. This model also offers a potential target and theoretical foundation for BC treatment, laying a robust groundwork for future research on the functional roles of disulfidptosis-associated lncRNAs in BC.

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来源期刊
CiteScore
2.10
自引率
0.00%
发文量
252
期刊介绍: Translational Cancer Research (Transl Cancer Res TCR; Print ISSN: 2218-676X; Online ISSN 2219-6803; http://tcr.amegroups.com/) is an Open Access, peer-reviewed journal, indexed in Science Citation Index Expanded (SCIE). TCR publishes laboratory studies of novel therapeutic interventions as well as clinical trials which evaluate new treatment paradigms for cancer; results of novel research investigations which bridge the laboratory and clinical settings including risk assessment, cellular and molecular characterization, prevention, detection, diagnosis and treatment of human cancers with the overall goal of improving the clinical care of cancer patients. The focus of TCR is original, peer-reviewed, science-based research that successfully advances clinical medicine toward the goal of improving patients'' quality of life. The editors and an international advisory group of scientists and clinician-scientists as well as other experts will hold TCR articles to the high-quality standards. We accept Original Articles as well as Review Articles, Editorials and Brief Articles.
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