Qin Wang, Wei Fan, Mingshan Li, Yuanyuan Wang, Yi Guo
{"title":"MDMNet:在心肺运动测试中识别器官系统限制的多维多模态网络。","authors":"Qin Wang, Wei Fan, Mingshan Li, Yuanyuan Wang, Yi Guo","doi":"10.1016/j.cmpb.2024.108557","DOIUrl":null,"url":null,"abstract":"<p><strong>Background and objective: </strong>Cardiopulmonary exercise testing (CPET) serves as an integrative and comprehensive assessment tool for cardiorespiratory fitness. In this paper, we present a novel multi-dimensional multi-modal network (MDMNet) to identify functional limitation of organ systems via CPET, which is of great importance in clinical practice and yet a challenging task due to (1) the intricate intra-variable associations, and (2) the significant inter-individual variability.</p><p><strong>Methods: </strong>The proposed model has three compelling characteristics. First, we employ a dedicated embedding strategy for CPET data to map raw inputs into the learned embedding space, facilitating the detection of latent features of physiological variables. Second, we devise a novel multi-dimensional feature extraction module to capture rich features of physiological inputs at different dimensions, which consists of a one-dimensional feature extraction branch unfolding both temporal and spatial patterns of the entire data, and a two-dimensional feature extraction branch based on Gramian Angular Field (GAF) encoding to reveal the complicated temporal correlation relationships between time points within a variable. Third, we integrate these techniques with clinically significant demographic information to establish our MDMNet incorporating multi-dimensional with multi-modal learning, thereby further addressing the issues of complex intra-variable associations and inter-individual variability simultaneously.</p><p><strong>Results: </strong>We evaluated the proposed method on the publicly available CPET dataset, achieving AUC scores of 0.948, 0.949 and 0.931 for three tasks respectively.</p><p><strong>Conclusions: </strong>The superiority of our method in discerning inter-individual differences was further demonstrated through partial least squares discriminant analysis, which holds significant potential for automated clinical application of CPET.</p>","PeriodicalId":10624,"journal":{"name":"Computer methods and programs in biomedicine","volume":"260 ","pages":"108557"},"PeriodicalIF":4.9000,"publicationDate":"2024-12-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"MDMNet: Multi-dimensional multi-modal network to identify organ system limitation in cardiopulmonary exercise testing.\",\"authors\":\"Qin Wang, Wei Fan, Mingshan Li, Yuanyuan Wang, Yi Guo\",\"doi\":\"10.1016/j.cmpb.2024.108557\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Background and objective: </strong>Cardiopulmonary exercise testing (CPET) serves as an integrative and comprehensive assessment tool for cardiorespiratory fitness. In this paper, we present a novel multi-dimensional multi-modal network (MDMNet) to identify functional limitation of organ systems via CPET, which is of great importance in clinical practice and yet a challenging task due to (1) the intricate intra-variable associations, and (2) the significant inter-individual variability.</p><p><strong>Methods: </strong>The proposed model has three compelling characteristics. First, we employ a dedicated embedding strategy for CPET data to map raw inputs into the learned embedding space, facilitating the detection of latent features of physiological variables. Second, we devise a novel multi-dimensional feature extraction module to capture rich features of physiological inputs at different dimensions, which consists of a one-dimensional feature extraction branch unfolding both temporal and spatial patterns of the entire data, and a two-dimensional feature extraction branch based on Gramian Angular Field (GAF) encoding to reveal the complicated temporal correlation relationships between time points within a variable. Third, we integrate these techniques with clinically significant demographic information to establish our MDMNet incorporating multi-dimensional with multi-modal learning, thereby further addressing the issues of complex intra-variable associations and inter-individual variability simultaneously.</p><p><strong>Results: </strong>We evaluated the proposed method on the publicly available CPET dataset, achieving AUC scores of 0.948, 0.949 and 0.931 for three tasks respectively.</p><p><strong>Conclusions: </strong>The superiority of our method in discerning inter-individual differences was further demonstrated through partial least squares discriminant analysis, which holds significant potential for automated clinical application of CPET.</p>\",\"PeriodicalId\":10624,\"journal\":{\"name\":\"Computer methods and programs in biomedicine\",\"volume\":\"260 \",\"pages\":\"108557\"},\"PeriodicalIF\":4.9000,\"publicationDate\":\"2024-12-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer methods and programs in biomedicine\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1016/j.cmpb.2024.108557\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer methods and programs in biomedicine","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1016/j.cmpb.2024.108557","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
MDMNet: Multi-dimensional multi-modal network to identify organ system limitation in cardiopulmonary exercise testing.
Background and objective: Cardiopulmonary exercise testing (CPET) serves as an integrative and comprehensive assessment tool for cardiorespiratory fitness. In this paper, we present a novel multi-dimensional multi-modal network (MDMNet) to identify functional limitation of organ systems via CPET, which is of great importance in clinical practice and yet a challenging task due to (1) the intricate intra-variable associations, and (2) the significant inter-individual variability.
Methods: The proposed model has three compelling characteristics. First, we employ a dedicated embedding strategy for CPET data to map raw inputs into the learned embedding space, facilitating the detection of latent features of physiological variables. Second, we devise a novel multi-dimensional feature extraction module to capture rich features of physiological inputs at different dimensions, which consists of a one-dimensional feature extraction branch unfolding both temporal and spatial patterns of the entire data, and a two-dimensional feature extraction branch based on Gramian Angular Field (GAF) encoding to reveal the complicated temporal correlation relationships between time points within a variable. Third, we integrate these techniques with clinically significant demographic information to establish our MDMNet incorporating multi-dimensional with multi-modal learning, thereby further addressing the issues of complex intra-variable associations and inter-individual variability simultaneously.
Results: We evaluated the proposed method on the publicly available CPET dataset, achieving AUC scores of 0.948, 0.949 and 0.931 for three tasks respectively.
Conclusions: The superiority of our method in discerning inter-individual differences was further demonstrated through partial least squares discriminant analysis, which holds significant potential for automated clinical application of CPET.
期刊介绍:
To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine.
Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.