利用 UKBB 数据探索重度抑郁障碍中与疾病相关的地区同质性变化的粒度。

Q2 Computer Science
Yewen Huang, Syed Ibrar Hussain, Demetrio Labate, Robert Azencott, Paul Thompson, Bhim Adhikari, Peter Kochunov
{"title":"利用 UKBB 数据探索重度抑郁障碍中与疾病相关的地区同质性变化的粒度。","authors":"Yewen Huang, Syed Ibrar Hussain, Demetrio Labate, Robert Azencott, Paul Thompson, Bhim Adhikari, Peter Kochunov","doi":"","DOIUrl":null,"url":null,"abstract":"<p><p>Illness related brain effects of neuropsychiatric disorders are not regionally uniform, with some regions showing large pathological effects while others are relatively spared. Presently, Big Data meta-analytic studies tabulate these effects using structural and/or functional brain atlases that are based on the anatomical boundaries, landmarks and connectivity patterns in healthy brains. These patterns are then translated to individual level predictors using approaches such as Regional Vulnerability Index (RVI), which quantifies the agreement between individual brain patterns and the canonical pattern found in the illness. However, the atlases from healthy brains are unlikely to align with deficit pattern expressed in specific disorders such as Major Depressive Disorder (MDD), thus reducing the statistical power for individualized predictions. Here, we evaluated a novel approach, where disorder specific templates are constructed using the Kullback-Leibler (KL) distance to balance granularity, signal-to-noise ratio and the contrast between regional effect sizes to maximize translatability of the population-wide illness pattern at the level of the individual. We used regional homogeneity (ReHo) maps extracted from resting state functional MRI for N = 2, 289 MDD sample (mean age ± s.d.: 63.2 ± 7.2 years) and N = 6104 control subjects (mean age ± s.d.: 62.9 ± 7.2 years) who were free of MDD and any other mental condition. The cortical effects of MDD were analyzed on the 3D spherical surfaces representing cerebral hemispheres. KL-distance was used to organize the cortical surface into 28 regions of interest based on effect sizes, connectivity and signal-to-noise ratio. The RVI values calculated using this novel approach showed significantly higher effect size of the illness than these calculated using standard Desikan brain atlas.</p>","PeriodicalId":34954,"journal":{"name":"Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing","volume":"30 ","pages":"647-663"},"PeriodicalIF":0.0000,"publicationDate":"2025-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Exploring the Granularity of the Illnesses-Related Changes in Regional Homogeneity in Major Depressive Disorder using the UKBB Data.\",\"authors\":\"Yewen Huang, Syed Ibrar Hussain, Demetrio Labate, Robert Azencott, Paul Thompson, Bhim Adhikari, Peter Kochunov\",\"doi\":\"\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Illness related brain effects of neuropsychiatric disorders are not regionally uniform, with some regions showing large pathological effects while others are relatively spared. Presently, Big Data meta-analytic studies tabulate these effects using structural and/or functional brain atlases that are based on the anatomical boundaries, landmarks and connectivity patterns in healthy brains. These patterns are then translated to individual level predictors using approaches such as Regional Vulnerability Index (RVI), which quantifies the agreement between individual brain patterns and the canonical pattern found in the illness. However, the atlases from healthy brains are unlikely to align with deficit pattern expressed in specific disorders such as Major Depressive Disorder (MDD), thus reducing the statistical power for individualized predictions. Here, we evaluated a novel approach, where disorder specific templates are constructed using the Kullback-Leibler (KL) distance to balance granularity, signal-to-noise ratio and the contrast between regional effect sizes to maximize translatability of the population-wide illness pattern at the level of the individual. We used regional homogeneity (ReHo) maps extracted from resting state functional MRI for N = 2, 289 MDD sample (mean age ± s.d.: 63.2 ± 7.2 years) and N = 6104 control subjects (mean age ± s.d.: 62.9 ± 7.2 years) who were free of MDD and any other mental condition. The cortical effects of MDD were analyzed on the 3D spherical surfaces representing cerebral hemispheres. KL-distance was used to organize the cortical surface into 28 regions of interest based on effect sizes, connectivity and signal-to-noise ratio. The RVI values calculated using this novel approach showed significantly higher effect size of the illness than these calculated using standard Desikan brain atlas.</p>\",\"PeriodicalId\":34954,\"journal\":{\"name\":\"Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing\",\"volume\":\"30 \",\"pages\":\"647-663\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2025-01-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"Computer Science\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing","FirstCategoryId":"1085","ListUrlMain":"","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"Computer Science","Score":null,"Total":0}
引用次数: 0

摘要

神经精神障碍的疾病相关脑效应并不是区域统一的,一些区域表现出较大的病理效应,而另一些区域相对较少。目前,大数据荟萃分析研究使用基于健康大脑的解剖边界、地标和连接模式的结构和/或功能脑地图集将这些影响制成表格。然后使用区域脆弱性指数(RVI)等方法将这些模式转化为个体水平的预测指标,该指标量化了个体大脑模式与疾病中发现的典型模式之间的一致性。然而,来自健康大脑的图谱不太可能与特定疾病(如重度抑郁症(MDD))中表达的缺陷模式一致,从而降低了个性化预测的统计能力。在这里,我们评估了一种新的方法,其中使用Kullback-Leibler (KL)距离构建疾病特定模板来平衡粒度,信噪比和区域效应大小之间的对比,以最大限度地提高个体水平上人群范围内疾病模式的可翻译性。我们使用静息状态功能MRI提取的区域均匀性(ReHo)图对N = 2,289名MDD样本(平均年龄±s.d: 63.2±7.2岁)和N = 6104名无MDD和任何其他精神疾病的对照受试者(平均年龄±s.d: 62.9±7.2岁)进行分析。在代表大脑半球的三维球面上分析了MDD的皮质效应。基于效应大小、连通性和信噪比,使用KL-distance将皮质表面组织成28个感兴趣的区域。使用这种新方法计算的RVI值显示,与使用标准Desikan脑图谱计算的RVI值相比,疾病的效应值明显更高。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploring the Granularity of the Illnesses-Related Changes in Regional Homogeneity in Major Depressive Disorder using the UKBB Data.

Illness related brain effects of neuropsychiatric disorders are not regionally uniform, with some regions showing large pathological effects while others are relatively spared. Presently, Big Data meta-analytic studies tabulate these effects using structural and/or functional brain atlases that are based on the anatomical boundaries, landmarks and connectivity patterns in healthy brains. These patterns are then translated to individual level predictors using approaches such as Regional Vulnerability Index (RVI), which quantifies the agreement between individual brain patterns and the canonical pattern found in the illness. However, the atlases from healthy brains are unlikely to align with deficit pattern expressed in specific disorders such as Major Depressive Disorder (MDD), thus reducing the statistical power for individualized predictions. Here, we evaluated a novel approach, where disorder specific templates are constructed using the Kullback-Leibler (KL) distance to balance granularity, signal-to-noise ratio and the contrast between regional effect sizes to maximize translatability of the population-wide illness pattern at the level of the individual. We used regional homogeneity (ReHo) maps extracted from resting state functional MRI for N = 2, 289 MDD sample (mean age ± s.d.: 63.2 ± 7.2 years) and N = 6104 control subjects (mean age ± s.d.: 62.9 ± 7.2 years) who were free of MDD and any other mental condition. The cortical effects of MDD were analyzed on the 3D spherical surfaces representing cerebral hemispheres. KL-distance was used to organize the cortical surface into 28 regions of interest based on effect sizes, connectivity and signal-to-noise ratio. The RVI values calculated using this novel approach showed significantly higher effect size of the illness than these calculated using standard Desikan brain atlas.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
CiteScore
4.50
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信