揭示山楂中表儿茶素没食子酸酯靶向异常心脏Ca2+信号蛋白的潜力:一项深入的心力衰竭治疗的计算机研究。

IF 2.4 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
J Praveen, M Anusuyadevi, K S Jayachandra
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引用次数: 0

摘要

心血管肌浆网(SR)钙(Ca2+) atp酶是心脏功能的重要决定因素。此外,Ca2+处理蛋白异常和非典型能量代谢是心力衰竭(HF)固有的。此外,SR中的Ca2+超载导致线粒体基质Ca2+超载,这可以触发活性氧(ROS)的产生,最终触发通透性过渡孔(PTP)和细胞色素C的释放,导致细胞凋亡,导致心律失常和许多疾病。尽管参与线粒体功能障碍的Ca2+功能障碍分子机制的蛋白质仍然难以捉摸,但本研究旨在评估可能参与导致线粒体功能障碍的Ca2+功能障碍的主要Ca2+处理蛋白,并通过各种硅分析预测针对分析的Ca2+处理蛋白最有效的药物。从相互作用分析中吸收的13个蛋白与四种最佳植物化学物质(COC)对接。此外,利用QikProp对酪胺、牡牡素、表儿茶素和表儿茶素没食子酸酯的ADME谱进行了适应,以评估其潜在的药物性。因此,使用Glide (Maestro)、autodock和vina进行分子对接评估。根据Maestro、auto-dock和auto-dock vina的156个对接结果,PKAC-a与表儿茶素没食子酸酯表现出良好的相互作用。因此,利用Desmond的2000 ns分子动力学(MD)模拟来评估可行的植物化学表儿茶素没食子酸酯- pkac -复合物结合稳定性,该研究证实,由于COC的构象刚性,表儿茶素没食子酸酯具有很高的抑制异常心脏Ca2+信号蛋白的可能性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Unraveling the potential of Epicatechin gallate from crataegus oxyacantha in targeting aberrant cardiac Ca2+ signalling proteins: an in-depth in-silico investigation for heart failure therapy.

The cardiovascular sarcoplasmic reticulum (SR) calcium (Ca2+) ATPase is an imperative determinant of cardiac functionality. In addition, anomalies in Ca2+ handling protein and atypical energy metabolism are inherent in heart failure (HF). Moreover, Ca2+ overload in SR leads to mitochondrial matrix Ca2+ overload, which can trigger the generation of Reactive Oxygen Species (ROS), culminating in the triggering of the Permeability Transition Pore (PTP) and Cytochrome C release, resulting in apoptosis that leads to arrhythmias and numerous disorders. Although proteins involved in the molecular mechanism of Ca2+ dysfunction regarding mitochondrial dysfunction remains elusive, this study aims to assess the major Ca2+ handling proteins which may be involved in the Ca2+ malfunction that causes mitochondrial dysfunction and predicting the most effective drug by targeting the analyzed Ca2+ handling proteins through various insilico analyses. Thirteen proteins absorbed from interaction analysis were docked with four optimal phytochemicals from Crataegus oxyacantha (COC). Furthermore, The ADME profile of tyramine, vitexin, Epicatechin, and Epicatechin gallate was acclimated to evaluate potential drugability utilizing QikProp. So, molecular docking evaluations were performed using Glide (Maestro), autodock, and vina. Based on the results of 156 dockings by Maestro, auto-dock, and auto-dock vina, PKAC-a with Epicatechin gallate exhibits good interaction. Therefore, a 2000 ns molecular dynamics (MD) simulation was utilized to assess the feasible phytochemical Epicatechin gallate - PKAC-a complex binding stability utilizing Desmond and this study confirmed that Epicatechin gallate from COC has high possibilities to inhibit the aberrant cardiac Ca2+ signaling proteins due to its conformational rigidity.

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来源期刊
Journal of Biomolecular Structure & Dynamics
Journal of Biomolecular Structure & Dynamics 生物-生化与分子生物学
CiteScore
8.90
自引率
9.10%
发文量
597
审稿时长
2 months
期刊介绍: The Journal of Biomolecular Structure and Dynamics welcomes manuscripts on biological structure, dynamics, interactions and expression. The Journal is one of the leading publications in high end computational science, atomic structural biology, bioinformatics, virtual drug design, genomics and biological networks.
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