Acrididae重复元件的进化动力学及其与基因组大小的关系。

IF 3.4 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Genomics Pub Date : 2025-01-01 Epub Date: 2024-12-04 DOI:10.1016/j.ygeno.2024.110971
Lina Zhao, Hao Yuan, Xuanzeng Liu, Huihui Chang, Xuan Jing, Yimeng Nie, Yuan Huang
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引用次数: 0

摘要

人们普遍认为,重复元件(REs)代表了真核生物基因组大小变化的主要机制。获得了59种Acrididae的基因组大小和REs,并对其进行了表征。基因组大小为6.60 pg ~ 19.35 pg, REs比例为57.92 % ~ 83.58 %。主要贡献者为LTR(2.34 % ~ 20.98 %)和LINEs(6.70 % ~ 16.33 %)。祖先重建结果表明,REs在祖先节点中的比例为69.53 %,表明它们经历了广泛的基因组扩增或收缩。REs比例与基因组大小呈显著正相关。发现转座因子占观察到的基因组大小变异的约41% %。此外,LTR被认为是与Acrididae基因组大小扩展相关的最显著的RE类型。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Evolutionary dynamics of repetitive elements and their relationship with genome size in Acrididae.

It is widely accepted that repetitive elements (REs) represent the primary mechanism driving genome size variation across eukaryotes. The observed genome sizes and REs of 59 species within the Acrididae were obtained and characterized. The genome sizes observed ranged from 6.60 pg to 19.35 pg, while the proportion of REs varied from 57.92 % to 83.58 %. The primary contributors were identified as LTR (2.34 % ∼ 20.98 %) and LINEs (6.70 % ∼ 16.33 %). The results of ancestral reconstruction indicated that the proportion of REs in ancestral nodes was 69.53 %, which suggests that they have undergone extensive genome expansion or contraction. A significant positive correlation was identified between the proportion of REs and genome size. Transposable elements were found to account for approximately 41 % of the observed variation in genome size. Moreover, the LTR was identified as the most significant RE type in relation to genome size expansion within the Acrididae.

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来源期刊
Genomics
Genomics 生物-生物工程与应用微生物
CiteScore
9.60
自引率
2.30%
发文量
260
审稿时长
60 days
期刊介绍: Genomics is a forum for describing the development of genome-scale technologies and their application to all areas of biological investigation. As a journal that has evolved with the field that carries its name, Genomics focuses on the development and application of cutting-edge methods, addressing fundamental questions with potential interest to a wide audience. Our aim is to publish the highest quality research and to provide authors with rapid, fair and accurate review and publication of manuscripts falling within our scope.
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