探索束状蛋白对其抑制剂的变构反应。

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL
The Journal of Physical Chemistry B Pub Date : 2024-12-12 Epub Date: 2024-12-02 DOI:10.1021/acs.jpcb.4c04813
Jinmei Pan, Kai Chen, Lirui Lin, Li-Yan Xu, En-Min Li, Geng Dong
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引用次数: 0

摘要

筋膜蛋白是一种主要的肌动蛋白结合蛋白(ABP),用于稳定丝状足,以支持癌细胞的有效粘附和迁移。fasin在转移性肿瘤中也高度表达。破坏筋膜蛋白上的肌动蛋白结合位点(actin-binding site, ABS)是阻碍肿瘤转移的重要途径。G2系列小分子是专门为阻断筋膜蛋白结合袋而配制的。确定抑制剂诱导的筋膜蛋白结构动力学对于全面了解其生物学功能和药物干预的战略发展至关重要。在这项研究中,我们利用平衡和动态-非平衡分子动力学(D-NEMD)来阐明在野生型(WT)及其变体中去除G2抑制剂时负责传递结构变化的分子机制。我们的研究结果表明,当G2被移除时,筋膜蛋白的结构动力学起源于筋膜蛋白的G2结合袋,并通过跨越所有四个β-三叶结构域的构象转化传播信号。尽管不同的突变变体表现出相似的构象网络,但它们表现出不同的响应时间。然而,突变体中的信号通路与WT型束蛋白相比保持一致。本研究为深入了解筋膜蛋白的结构特征和通讯途径提供了有价值的见解,并为开发在癌症治疗中有前景的靶向抑制剂提供了途径。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploring the Allosteric Response of Fascin to Its Inhibitor.

Fascin is a major actin-binding protein (ABP) for stabilizing filopodia to support efficient adhesion and migration of cancer cells. Fascin is also highly expressed in metastatic tumors. Disrupting the actin-binding site (ABS) on fascin constitutes a critical approach to hindering tumor metastasis. The G2 series of small molecules was formulated with the specific purpose of obstructing the binding pocket of fascin. The determination of inhibitor-induced structural dynamics in fascin is crucial for a comprehensive of its biological functions and the strategic development of pharmacological interventions. In this study, we utilized both equilibrium and dynamical-nonequilibrium molecular dynamics (D-NEMD) to elucidate the molecular mechanisms responsible for transmitting structural changes when removing the G2 inhibitor, in both the wild type (WT) and its variants. Our findings indicate that when G2 is removed, structural dynamics in fascin originate from the G2 binding pocket of fascin and propagate signals through the conformational transformation that spans all four β-trefoil domains. Although different mutant variants demonstrated comparable conformational networks, they showed varying response times. However, the signaling pathways in mutants remained consistent in comparison to the WT fascin. This study provides valuable insights into the structural features and communication pathways of fascin and provides avenues for the development of targeted inhibitors with promising prospects in cancer therapy.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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