肠道菌群、羧酸和心脏基因表达相互作用引发糖尿病性心肌病的多组学力学分析。

IF 5 2区 生物学 Q1 MICROBIOLOGY
mSystems Pub Date : 2025-01-21 Epub Date: 2024-11-29 DOI:10.1128/msystems.01450-24
Meixin Shi, Bingbing Zhao, Wenjie Cai, Hui Yuan, Xiao Liang, Zhitao Li, Xinyu Liu, Ye Jin, Xi Liu, Can Wei
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引用次数: 0

摘要

众所周知,肠道微生物失衡是糖尿病(DM)及其并发症发生发展的潜在因素。此外,心脏和肠道微生物群可以通过肠道-代谢物-心脏轴相互调节。本研究采用元基因组学、代谢组学和转录组学对瘦素受体缺乏的db/db小鼠的肠道微生物群、血清代谢物水平和差异表达基因(DEGs)的变化进行测序,分析血清代谢物与肠道微生物群或DEGs之间的相关性。结果显示,与正常db/m组相比,db/m组糖尿病小鼠的1029个心脏基因和353个血清代谢物存在显著差异,包括PPAR信号通路中富集的deg和短链羧酸(CAs)的增加。宏基因组学结果显示,db/db组小鼠肠道菌群被破坏,尤其是Lachnospiraceae细菌和Oscillospiraceae细菌显著减少。Pearson相关分析显示,CAs与PPAR信号通路相关的deg呈显著正相关,而CAs与上述物种的丰度呈负相关。综上所述,2型糖尿病(T2DM)可通过受肠道菌群影响的血清短链CAs水平上调部分心脏基因的表达,从而在糖尿病性心肌病(DCM)的发生发展中发挥作用。重要性:我们的研究结果清楚地将T2DM和正常小鼠心脏基因的变化与血清代谢物和肠道菌群的变化联系起来,表明生物学过程中的一些基因与肠道菌群中保护性微生物群的减少密切相关。本研究为探讨DCM的发病机制提供了理论基础,也为今后应用肠道菌群治疗DCM提供了初步依据。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Multi-omics mechanical analysis of gut microbiota, carboxylic acids, and cardiac gene expression interaction triggering diabetic cardiomyopathy.

It is well known that gut microbial imbalance is a potential factor for the occurrence and development of diabetes mellitus (DM) and its complications. Moreover, the heart and gut microbiota can regulate each other through the gut-metabolite-heart axis. In this study, metagenomics, metabolomics, and transcriptomics were chosen to sequence the changes in gut microbiota, serum metabolite levels, and differentially expressed genes (DEGs) in leptin receptor-deficient db/db mice and analyze the correlation between serum metabolites and gut microbiota or DEGs. According to the results, there were significant differences in the 1,029 cardiac genes and 353 serum metabolites in diabetic mice of the db/db group, including DEGs enriched in the PPAR signaling pathway and increased short-chain carboxylic acids (CAs), when compared with the normal db/m group. According to metagenomics, the gut microbiota of mice in the db/db group were disrupted, and particularly Lachnospiraceae bacteria and Oscillospiraceae bacteria significantly decreased. Also, according to the Pearson correlation analysis, a significant positive correlation was found between CAs and PPAR signaling pathway-related DEGs, and a negative correlation was found between CAs and the abundance of the above-mentioned species. To sum up, type 2 diabetes mellitus (T2DM) can upregulate the expression of partial cardiac genes through the levels of serum short-chain CAs affected by gut microbiota, thus playing a role in the occurrence and development of diabetic cardiomyopathy (DCM).

Importance: Our research results clearly link the changes in heart genes of T2DM and normal mice with changes in serum metabolites and gut microbiota, indicating that some genes in biological processes are closely related to the reduction of protective microbiota in the gut microbiota. This study provides a theoretical basis for investigating the mechanism of DCM and may provide preliminary evidence for the future use of gut microbiota therapy for DCM.

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来源期刊
mSystems
mSystems Biochemistry, Genetics and Molecular Biology-Biochemistry
CiteScore
10.50
自引率
3.10%
发文量
308
审稿时长
13 weeks
期刊介绍: mSystems™ will publish preeminent work that stems from applying technologies for high-throughput analyses to achieve insights into the metabolic and regulatory systems at the scale of both the single cell and microbial communities. The scope of mSystems™ encompasses all important biological and biochemical findings drawn from analyses of large data sets, as well as new computational approaches for deriving these insights. mSystems™ will welcome submissions from researchers who focus on the microbiome, genomics, metagenomics, transcriptomics, metabolomics, proteomics, glycomics, bioinformatics, and computational microbiology. mSystems™ will provide streamlined decisions, while carrying on ASM''s tradition of rigorous peer review.
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