通过转录组测序和综合生物信息学鉴定CCR7作为多囊卵巢综合征的潜在生物标志物

IF 3.4 2区 生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY
Zuwei Yang , Chengliang Zhou , Li Jin , Jiexue Pan
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引用次数: 0

摘要

多囊卵巢综合征(PCOS)是一种常见的内分泌疾病,其发病机制尚不明确。本研究对5名PCOS女性和5名对照组的颗粒细胞进行转录组测序,然后进行生物信息学分析。我们鉴定出684种mrna和167种lncrna具有显著的差异表达。基因本体和KEGG分析强调了这些基因在免疫和炎症反应中的富集。通过CytoHubba插件和三种机器学习算法,CCR7被确定为PCOS的枢纽基因,并通过分析GSE65746、GSE34526和80名PCOS受试者(40名PCOS患者和40名对照组)进一步验证。此外,构建了一个以CCR7为靶点的竞争性内源性RNA网络。免疫浸润分析显示PCOS女性单核细胞浸润显著减少,CCR7表达与naïve B细胞呈正相关。我们的研究结果表明,CCR7及相关分子在多囊卵巢综合征的发病机制中起着至关重要的作用,可能作为多囊卵巢综合征的生物标志物。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of CCR7 as a potential biomarker in polycystic ovary syndrome through transcriptome sequencing and integrated bioinformatics
Polycystic ovary syndrome (PCOS) is a prevalent endocrine disorder, yet its mechanisms remain elusive. This study employed transcriptome sequencing on granulosa cells from 5 PCOS women and 5 controls, followed by bioinformatic analyses. We identified 684 mRNAs and 167 lncRNAs with significant differential expression. Gene Ontology and KEGG analyses highlighted enrichment in immune and inflammatory responses among these genes. Through CytoHubba plug-in and three machine learning algorithms, CCR7 was identified as the hub gene of PCOS, further validated through analysis of GSE65746, GSE34526 and a cohort of eighty subjects (40 PCOS and 40 controls). Furthermore, a competing endogenous RNA network targeting CCR7 was constructed. Immune infiltration analysis unveiled a significant decrease in monocyte infiltration in PCOS women, with CCR7 expression positively correlated to naïve B cells. Our findings suggest CCR7 and related molecules play a crucial role in the pathogenesis of PCOS, potentially serving as biomarkers for the disorder.
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来源期刊
Genomics
Genomics 生物-生物工程与应用微生物
CiteScore
9.60
自引率
2.30%
发文量
260
审稿时长
60 days
期刊介绍: Genomics is a forum for describing the development of genome-scale technologies and their application to all areas of biological investigation. As a journal that has evolved with the field that carries its name, Genomics focuses on the development and application of cutting-edge methods, addressing fundamental questions with potential interest to a wide audience. Our aim is to publish the highest quality research and to provide authors with rapid, fair and accurate review and publication of manuscripts falling within our scope.
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