BreathVisionNet:用于呼气 CT 图像合成的肺功能引导 CNN 变换器混合模型

IF 4.9 2区 医学 Q1 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Tiande Zhang, Haowen Pang, Yanan Wu, Jiaxuan Xu, Lingkai Liu, Shang Li, Shuyue Xia, Rongchang Chen, Zhenyu Liang, Shouliang Qi
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引用次数: 0

摘要

背景和目的:慢性阻塞性肺病(COPD)的病因和临床表现具有高度异质性。呼气计算机断层扫描(CT)可有效评估空气潴留,有助于疾病诊断。然而,由于担心辐射照射和费用问题,呼气 CT 并未被常规采用。近期有关呼气 CT 合成的研究主要集中在成像特征上,而忽略了患者的肺功能:为了解决这些问题,我们开发了一种名为 BreathVisionNet 的新型模型,该模型结合了肺功能数据,可指导从吸气 CT 合成呼气 CT。该模型采用了卷积神经网络和变压器相结合的架构,以充分利用慢性阻塞性肺病患者的不规则表型分布。通过将全局信息纳入编码器,该模型能更好地理解远距离和全局背景。边缘信息和多视角数据的利用进一步提高了合成 CT 的质量。通过使用合成的呼气 CT 和吸气 CT,可以估算出参数响应图(PRM),从而量化正常、肺气肿和功能性小气道疾病(fSAD)的 COPD 表型,包括它们的百分比、空间分布和体素分布图:结果:BreathVisionNet 在合成图像质量方面优于其他生成模型。其平均绝对误差、归一化均方误差、结构相似性指数和峰值信噪比分别为 78.207 HU、0.643、0.847 和 25.828 dB。比较预测 PRM 和真实 PRM,Dice 系数可达 0.732(肺气肿)和 0.560(fSAD)。在开发数据集(低辐射剂量 CT 扫描)中,真实 fSAD 百分比与预测 fSAD 百分比之差的平均值为 4.42,而在独立的外部验证数据集(常规剂量)中为 9.05,这表明模型具有很强的普适性。根据体素分布图训练的分类器在预测是否存在慢性阻塞性肺病方面的准确率可达 0.891:BreathVisionNet 可以从吸气 CT 中准确合成呼气 CT 图像,并预测其体素分布。估计的 PRM 可以帮助量化正常、肺气肿和 fSAD 的 COPD 表型。在只能获得吸气 CT 图像的情况下,这一功能可为了解慢性阻塞性肺病的多样性提供更多信息。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
BreathVisionNet: A pulmonary-function-guided CNN-transformer hybrid model for expiratory CT image synthesis.

Background and objective: Chronic obstructive pulmonary disease (COPD) has high heterogeneity in etiologies and clinical manifestations. Expiratory Computed tomography (CT) can effectively assess air trapping, aiding in disease diagnosis. However, due to concerns about radiation exposure and cost, expiratory CT is not routinely performed. Recent work on synthesizing expiratory CT has primarily focused on imaging features while neglecting patient-specific pulmonary function.

Methods: To address these issues, we developed a novel model named BreathVisionNet that incorporates pulmonary function data to guide the synthesis of expiratory CT from inspiratory CT. An architecture combining a convolutional neural network and transformer is introduced to leverage the irregular phenotypic distribution in COPD patients. The model can better understand the long-range and global contexts by incorporating global information into the encoder. The utilization of edge information and multi-view data further enhances the quality of the synthesized CT. Parametric response mapping (PRM) can be estimated by using synthesized expiratory CT and inspiratory CT to quantify COPD phenotypes of the normal, emphysema, and functional small airway disease (fSAD), including their percentages, spatial distributions, and voxel distribution maps.

Results: BreathVisionNet outperforms other generative models in terms of synthesized image quality. It achieves a mean absolute error, normalized mean square error, structural similarity index and peak signal-to-noise ratio of 78.207 HU, 0.643, 0.847 and 25.828 dB, respectively. Comparing the predicted and real PRM, the Dice coefficient can reach 0.732 (emphysema) and 0.560 (fSAD). The mean of differences between true and predicted fSAD percentage is 4.42 for the development dataset (low radiation dose CT scans), and 9.05 for an independent external validation dataset (routine dose), indicating that model has great generalizability. A classifier trained on voxel distribution maps can achieve an accuracy of 0.891 in predicting the presence of COPD.

Conclusions: BreathVisionNet can accurately synthesize expiratory CT images from inspiratory CT and predict their voxel distribution. The estimated PRM can help to quantify COPD phenotypes of the normal, emphysema, and fSAD. This capability provides additional insights into COPD diversity while only inspiratory CT images are available.

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来源期刊
Computer methods and programs in biomedicine
Computer methods and programs in biomedicine 工程技术-工程:生物医学
CiteScore
12.30
自引率
6.60%
发文量
601
审稿时长
135 days
期刊介绍: To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine. Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.
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