Astrid Van Camp, Eva Punter, Katrien Houbrechts, Lesley Cockmartin, Renate Prevos, Nicholas W. Marshall, Henry C. Woodruff, Philippe Lambin, Hilde Bosmans
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In addition to their use in comparative (virtual clinical trial) detection experiments, these models have potential application in training deep learning models and in the understanding and interpretation of breast lesions. Existing simulation methods, however, often lack the capacity to model the diversity occurring in breast lesions or to generate models relevant for a specific case. This study focuses on clusters of microcalcifications and introduces an automated, flexible toolbox designed to generate microcalcification cluster models customized to specific tasks.</p>\n </section>\n \n <section>\n \n <h3> Methods</h3>\n \n <p>The toolbox allows users to control a large number of simulation parameters related to model characteristics such as lesion size, calcification shape, or number of microcalcifications per cluster. This leads to the capability of creating models that range from regular to complex clusters. Based on the input parameters, which are either tuned manually or pre-set for a specific clinical type, different sets of models can be simulated depending on the use case. Two lesion generation methods are described. The first method generates three-dimensional microcalcification clusters models based on geometrical shapes and transformations. The second method creates two-dimensional (2D) microcalcification cluster models for a specific 2D mammographic image. This novel method employs radiomics analysis to account for local textures, ensuring the simulated microcalcification cluster is appropriately integrated within the existing breast tissue. The toolbox is implemented in the Python language and can be conveniently run through a Jupyter Notebook interface, openly accessible at https://gitlab.kuleuven.be/medphysqa/deploy/breast-calcifications. Validation studies performed by radiologists assessed the level of malignancy and realism of clusters tuned with specific parameters and inserted in mammographic images.</p>\n </section>\n \n <section>\n \n <h3> Results</h3>\n \n <p>The flexibility of the toolbox with multiple simulation methods is illustrated, as well as the compatibility with different simulation frameworks and image types. The automation allows for the straightforward and fast generation of diverse microcalcification cluster models. The generated models are most likely applicable for various tasks as they can be configured in a variety of ways and inserted in different types of mammographic images of multiple acquisition systems. Validation studies confirmed the capacity to simulate realistic clusters and capture clinical properties when tuned with appropriate parameter settings.</p>\n </section>\n \n <section>\n \n <h3> Conclusion</h3>\n \n <p>This simulation toolbox offers a flexible means of simulating microcalcification cluster models with potential use in both technical and clinical research in mammography imaging. The 3D generation methods allow for specifying many characteristics regarding the calcification shape and cluster architecture, and the 2D generation method presents a novel manner to create microcalcification clusters tailored to existing breast textures.</p>\n </section>\n </div>","PeriodicalId":18384,"journal":{"name":"Medical physics","volume":"52 2","pages":"1335-1349"},"PeriodicalIF":3.2000,"publicationDate":"2024-11-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/mp.17521","citationCount":"0","resultStr":"{\"title\":\"An automated toolbox for microcalcification cluster modeling for mammographic imaging\",\"authors\":\"Astrid Van Camp, Eva Punter, Katrien Houbrechts, Lesley Cockmartin, Renate Prevos, Nicholas W. Marshall, Henry C. 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In addition to their use in comparative (virtual clinical trial) detection experiments, these models have potential application in training deep learning models and in the understanding and interpretation of breast lesions. Existing simulation methods, however, often lack the capacity to model the diversity occurring in breast lesions or to generate models relevant for a specific case. This study focuses on clusters of microcalcifications and introduces an automated, flexible toolbox designed to generate microcalcification cluster models customized to specific tasks.</p>\\n </section>\\n \\n <section>\\n \\n <h3> Methods</h3>\\n \\n <p>The toolbox allows users to control a large number of simulation parameters related to model characteristics such as lesion size, calcification shape, or number of microcalcifications per cluster. This leads to the capability of creating models that range from regular to complex clusters. Based on the input parameters, which are either tuned manually or pre-set for a specific clinical type, different sets of models can be simulated depending on the use case. Two lesion generation methods are described. The first method generates three-dimensional microcalcification clusters models based on geometrical shapes and transformations. The second method creates two-dimensional (2D) microcalcification cluster models for a specific 2D mammographic image. This novel method employs radiomics analysis to account for local textures, ensuring the simulated microcalcification cluster is appropriately integrated within the existing breast tissue. The toolbox is implemented in the Python language and can be conveniently run through a Jupyter Notebook interface, openly accessible at https://gitlab.kuleuven.be/medphysqa/deploy/breast-calcifications. Validation studies performed by radiologists assessed the level of malignancy and realism of clusters tuned with specific parameters and inserted in mammographic images.</p>\\n </section>\\n \\n <section>\\n \\n <h3> Results</h3>\\n \\n <p>The flexibility of the toolbox with multiple simulation methods is illustrated, as well as the compatibility with different simulation frameworks and image types. The automation allows for the straightforward and fast generation of diverse microcalcification cluster models. The generated models are most likely applicable for various tasks as they can be configured in a variety of ways and inserted in different types of mammographic images of multiple acquisition systems. 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引用次数: 0
摘要
背景:乳腺 X 射线成像对乳腺癌的检测和诊断至关重要。除肿块外,钙化也是令人担忧的问题,乳腺癌的早期检测也在很大程度上依赖于对可疑微钙化簇的正确解读。目的:计算机模拟病灶模型可用于开发、优化或改进成像技术。除了用于对比(虚拟临床试验)检测实验外,这些模型还有可能应用于训练深度学习模型以及理解和解释乳腺病变。然而,现有的模拟方法往往无法模拟乳腺病变的多样性,也无法生成与特定病例相关的模型。本研究以微钙化簇为重点,介绍了一种自动、灵活的工具箱,旨在生成针对特定任务定制的微钙化簇模型:该工具箱允许用户控制大量与模型特征相关的模拟参数,如病变大小、钙化形状或每簇微小钙化的数量。这样就能创建从规则到复杂的簇群模型。根据手动调整或为特定临床类型预先设置的输入参数,可以模拟出不同的模型集,具体取决于使用情况。本文介绍了两种病灶生成方法。第一种方法根据几何形状和变换生成三维微钙化簇模型。第二种方法是针对特定的二维乳腺 X 射线图像生成二维微钙化簇模型。这种新方法采用放射组学分析来考虑局部纹理,确保模拟的微钙化簇与现有乳腺组织适当融合。该工具箱使用 Python 语言实现,可通过 Jupyter Notebook 界面方便地运行,可在 https://gitlab.kuleuven.be/medphysqa/deploy/breast-calcifications 上公开访问。由放射科医生进行的验证研究评估了用特定参数调整并插入乳房X光图像中的乳腺簇的恶性程度和逼真度:结果:该工具箱具有多种模拟方法的灵活性,以及与不同模拟框架和图像类型的兼容性。自动化可直接快速生成各种微钙化簇模型。生成的模型很可能适用于各种任务,因为它们可以以多种方式进行配置,并插入到多种采集系统的不同类型的乳腺 X 射线图像中。验证研究证实,当使用适当的参数设置进行调整时,该模型能够模拟真实的簇群并捕捉临床特性:该模拟工具箱为模拟微钙化簇模型提供了一种灵活的方法,可用于乳腺 X 射线成像的技术和临床研究。三维生成方法允许指定有关钙化形状和簇结构的许多特征,二维生成方法提供了一种新的方式来创建适合现有乳房纹理的微钙化簇。
An automated toolbox for microcalcification cluster modeling for mammographic imaging
Background
Mammographic imaging is essential for breast cancer detection and diagnosis. In addition to masses, calcifications are of concern and the early detection of breast cancer also heavily relies on the correct interpretation of suspicious microcalcification clusters. Even with advances in imaging and the introduction of novel techniques such as digital breast tomosynthesis and contrast-enhanced mammography, a correct interpretation can still be challenging given the subtle nature and large variety of calcifications.
Purpose
Computer simulated lesion models can serve to develop, optimize, or improve imaging techniques. In addition to their use in comparative (virtual clinical trial) detection experiments, these models have potential application in training deep learning models and in the understanding and interpretation of breast lesions. Existing simulation methods, however, often lack the capacity to model the diversity occurring in breast lesions or to generate models relevant for a specific case. This study focuses on clusters of microcalcifications and introduces an automated, flexible toolbox designed to generate microcalcification cluster models customized to specific tasks.
Methods
The toolbox allows users to control a large number of simulation parameters related to model characteristics such as lesion size, calcification shape, or number of microcalcifications per cluster. This leads to the capability of creating models that range from regular to complex clusters. Based on the input parameters, which are either tuned manually or pre-set for a specific clinical type, different sets of models can be simulated depending on the use case. Two lesion generation methods are described. The first method generates three-dimensional microcalcification clusters models based on geometrical shapes and transformations. The second method creates two-dimensional (2D) microcalcification cluster models for a specific 2D mammographic image. This novel method employs radiomics analysis to account for local textures, ensuring the simulated microcalcification cluster is appropriately integrated within the existing breast tissue. The toolbox is implemented in the Python language and can be conveniently run through a Jupyter Notebook interface, openly accessible at https://gitlab.kuleuven.be/medphysqa/deploy/breast-calcifications. Validation studies performed by radiologists assessed the level of malignancy and realism of clusters tuned with specific parameters and inserted in mammographic images.
Results
The flexibility of the toolbox with multiple simulation methods is illustrated, as well as the compatibility with different simulation frameworks and image types. The automation allows for the straightforward and fast generation of diverse microcalcification cluster models. The generated models are most likely applicable for various tasks as they can be configured in a variety of ways and inserted in different types of mammographic images of multiple acquisition systems. Validation studies confirmed the capacity to simulate realistic clusters and capture clinical properties when tuned with appropriate parameter settings.
Conclusion
This simulation toolbox offers a flexible means of simulating microcalcification cluster models with potential use in both technical and clinical research in mammography imaging. The 3D generation methods allow for specifying many characteristics regarding the calcification shape and cluster architecture, and the 2D generation method presents a novel manner to create microcalcification clusters tailored to existing breast textures.
期刊介绍:
Medical Physics publishes original, high impact physics, imaging science, and engineering research that advances patient diagnosis and therapy through contributions in 1) Basic science developments with high potential for clinical translation 2) Clinical applications of cutting edge engineering and physics innovations 3) Broadly applicable and innovative clinical physics developments
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