多容量网络上分布式、不可变和透明的生物医学有限数据集请求管理。

IF 4.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS
Yufei Yu, Maxim Edelson, Anh Pham, Jonathan E Pekar, Brian Johnson, Kai Post, Tsung-Ting Kuo
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引用次数: 0

摘要

研究目的我们的研究旨在通过开发一个简化的平台来加快有限数据集(LDS)的数据共享请求,该平台允许对网络活动进行分布式、不可变的管理,提供透明、直观的数据访问历史审计,并在多容量网络设置上对其进行系统评估,以获得有意义的效率指标:我们开发了一个基于区块链的系统,其中包含六种类型的智能合约,可自动执行主要利益相关者之间的 LDS 共享流程。我们的工作流程包括元数据初始化、访问请求处理和审计日志查询。我们在三台不同规格的机器上使用合成数据对系统进行了评估,以模拟真实世界的场景。使用的数据包括 1000 个研究人员请求和 360 000 个日志查询:注册和响应研究人员的访问请求平均需要 2.5 秒。非空输出的审计日志查询的平均运行时间为 3 毫秒。各机构的运行时间指标显示出与其计算能力相关的总体趋势:我们的系统可以将 LDS 共享请求时间从潜在的数小时缩短到数秒,同时提高多机构环境下数据访问的透明度。不同地点的性能存在差异,这可归因于硬件规格的不同。超过一定的硬件阈值后,性能提升变得微不足道,这说明网络速度等外部因素的影响:我们基于区块链的系统有可能通过加强数据访问流程、加快数据链接的访问和交付、通过清晰的审计追踪提高透明度以及加强对医疗数据管理的信任来加速临床研究。我们的智能合约可在以下网址获取:https://github.com/graceyufei/LDS-Request-Management。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Distributed, immutable, and transparent biomedical limited data set request management on multi-capacity network.

Objective: Our study aimed to expedite data sharing requests of Limited Data Sets (LDS) through the development of a streamlined platform that allows distributed, immutable management of network activities, provides transparent and intuitive auditing of data access history, and systematically evaluated it on a multi-capacity network setting for meaningful efficiency metrics.

Materials and methods: We developed a blockchain-based system with six types of smart contracts to automate the LDS sharing process among major stakeholders. Our workflow included metadata initialization, access-request processing, and audit-log querying. We evaluated our system using synthetic data on three machines with varying specifications to emulate real-world scenarios. The data employed included ∼1000 researcher requests and ∼360 000 log queries.

Results: On average, it took ∼2.5 s to register and respond to a researcher access request. The average runtime for an audit-log query with non-empty output was ∼3 ms. The runtime metrics at each institution showed general trends affiliated with their computational capacity.

Discussion: Our system can reduce the LDS sharing request time from potentially hours to seconds, while enhancing data access transparency in a multi-institutional setting. There were variations in performance across sites that could be attributed to differences in hardware specifications. The performance gains became marginal beyond certain hardware thresholds, pointing to the influence of external factors such as network speeds.

Conclusion: Our blockchain-based system can potentially accelerate clinical research by strengthening the data access process, expediting access and delivery of data links, increasing transparency with clear audit trails, and reinforcing trust in medical data management. Our smart contracts are available at: https://github.com/graceyufei/LDS-Request-Management.

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来源期刊
Journal of the American Medical Informatics Association
Journal of the American Medical Informatics Association 医学-计算机:跨学科应用
CiteScore
14.50
自引率
7.80%
发文量
230
审稿时长
3-8 weeks
期刊介绍: JAMIA is AMIA''s premier peer-reviewed journal for biomedical and health informatics. Covering the full spectrum of activities in the field, JAMIA includes informatics articles in the areas of clinical care, clinical research, translational science, implementation science, imaging, education, consumer health, public health, and policy. JAMIA''s articles describe innovative informatics research and systems that help to advance biomedical science and to promote health. Case reports, perspectives and reviews also help readers stay connected with the most important informatics developments in implementation, policy and education.
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