配位甘氨酸与水分子氢键的扰动和变异能量分解分析。

IF 2.3 3区 化学 Q3 CHEMISTRY, PHYSICAL
Snežana D Zarić, Sonja S Zrilić, Dragan B Ninković, Mihajlo Etinski
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引用次数: 0

摘要

研究了配位甘氨酸和水的三种氢键:α-氨基的 NH/O、涉及与金属离子配位的氧(O1)的 O1/HO,以及涉及α-羰基氧(O2)的 O2/HO。研究了各种甘氨酸配合物:八面体钴(III)和镍(II)、方形金字塔铜(II)、方形平面铜(II)、钯(II)和铂(II)配合物。利用对称性适应扰动理论(SAPT)和变异能量分解分析(EDA)方法(TPSS-D3/def2-TZVPP)分析了这三种氢键类型的性质。EDA 分解的结果与可靠的 SAPT2+3/def2-TZVPP 及其与 CCSD(T)/CBS 能量的总相互作用值十分吻合。在大多数相互作用中,静电作用通常是最主要的吸引能量项,其次是轨道弛豫,最后是最弱的色散。我们比较了各种络合物的 EDA 结果,以确定络合物电荷、金属氧化性、配位和原子序数对能量分解项的影响。络合物电荷对分解项数值的影响最大,其次是金属氧化性和配位数,而原子序数对其影响最小。所有络合物和金属的变化对 NH/O 和 O1/HO 作用结果的影响都比对 O2/HO 作用结果的影响大,这是因为 O2/HO 离金属离子的位置更远。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Perturbational and variational energy decomposition analysis on hydrogen bonds of coordinated glycine with water molecule.

Three types of hydrogen bonds of coordinated glycine and water had been investigated: NH/O of α-amino group, O1/HO involving oxygen coordinated to the metal ion (O1), and O2/HO involving α-carbonyl oxygen (O2). Various glycine complexes were investigated: octahedral cobalt(III) and nickel(II), square pyramidal copper(II), and square planar copper(II), palladium(II), and platinum(II) complexes. Nature of these three hydrogen bond types was analysed using symmetry-adapted perturbation theory (SAPT) and variational energy decomposition analysis (EDA) method (TPSS-D3/def2-TZVPP). The results of the EDA decomposition are in good agreement with the reliable SAPT2+3/def2-TZVPP and its total interaction values with CCSD(T)/CBS energies. Electrostatic interaction is generally the dominant attractive energy term in most of the interactions, followed by orbital relaxation, and lastly dispersion as the weakest. We compared EDA results of various complexes to determine the effects of complex charge, metal oxidation, coordination, and atomic number on the energy decomposition terms. The complex charge influences the values of decomposition terms the most, followed by metal oxidation and coordination number, while atomic number effects them the least. All complex and metal changes have a more significant effect on the results of NH/O and O1/HO then O2/HO interactions, due to its location further away from the metal ion.

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来源期刊
Chemphyschem
Chemphyschem 化学-物理:原子、分子和化学物理
CiteScore
4.60
自引率
3.40%
发文量
425
审稿时长
1.1 months
期刊介绍: ChemPhysChem is one of the leading chemistry/physics interdisciplinary journals (ISI Impact Factor 2018: 3.077) for physical chemistry and chemical physics. It is published on behalf of Chemistry Europe, an association of 16 European chemical societies. ChemPhysChem is an international source for important primary and critical secondary information across the whole field of physical chemistry and chemical physics. It integrates this wide and flourishing field ranging from Solid State and Soft-Matter Research, Electro- and Photochemistry, Femtochemistry and Nanotechnology, Complex Systems, Single-Molecule Research, Clusters and Colloids, Catalysis and Surface Science, Biophysics and Physical Biochemistry, Atmospheric and Environmental Chemistry, and many more topics. ChemPhysChem is peer-reviewed.
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