探索 ccRCC 的免疫格局:预后特征和治疗意义。

IF 5.3 2区 医学 Q1 Biochemistry, Genetics and Molecular Biology
Minjie Pan, Xinchi Xu, Dong Zhang, Wei Cao
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引用次数: 0

摘要

肿瘤免疫微环境与透明细胞肾细胞癌(ccRCC)的发展有关。然而,免疫微环境在ccRCC中的作用尚未得到深入研究。在这项研究中,我们将六个ccRCC队列合并成一个大型队列,并使用ssGSEA算法将表达矩阵量化为53个免疫术语。通过1000次迭代的L1-惩罚(lasso)估计和Cox回归分析,筛选出5个与预后相关的免疫项,并计算出免疫相关风险评分(IRS)。IRS对ccRCC的预后预测效果令人满意。然后,我们比较了两个 IRS 亚组的临床和基因组特征。低IRS患者的肿瘤突变负荷(TMB)水平较高,拷贝数变异(CNV)水平较低,这表明低IRS组患者对免疫疗法产生反应的概率较高。我们采用了TIDE和亚类图谱分析来证实我们的结果,结果表明低IRS组患者的免疫疗法应答率明显更高。根据癌症药物敏感性基因组学(GDSC),IRS高的患者对舒尼替尼的IC50值较低,而舒尼替尼是ccRCC患者的一线治疗药物。因此,我们探索了ccRCC肿瘤微环境的免疫特征,并构建了一个特征。分析表明,我们的特征能有效预测预后和免疫治疗反应率。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Exploring the Immune Landscape of ccRCC: Prognostic Signatures and Therapeutic Implications.

The tumour immunological microenvironment is involved in the development of clear cell renal cell carcinoma (ccRCC). Nevertheless, the role of the immunological microenvironment in ccRCC has not been thoroughly investigated. In this study, we combined six ccRCC cohorts into a large cohort and quantified the expression matrix into 53 immunological terms using the ssGSEA algorithm. Five immune terms related to prognosis were screened through 1000 iterations of L1-penalised (lasso) estimation and Cox regression analysis for immune-related risk score (IRS) calculation. The IRS showed satisfactory prognosis prediction efficacy in ccRCC. We then compared the clinical and genomic characteristics of two IRS subgroups. Patients with low IRS showed a high level of tumour mutational burden (TMB) and a low level of copy number variation (CNV), indicating that low IRS group patients have a higher probability of responding to immunotherapy. We employed TIDE and subclass mapping analyses to corroborate our results, and the findings demonstrated that patients with a low IRS had a significantly greater percentage of immunotherapy response. According to the Genomics of Drug Sensitivity in Cancer (GDSC), patients with a high IRS had a decreased IC50 for sunitinib, which is the first-line treatment for ccRCC patients. As a result, the immune characteristics of the microenvironment of ccRCC tumours have been explored, and a signature has been constructed. Analysis demonstrated that our signature could effectively predict prognosis and immunotherapy response rate.

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来源期刊
CiteScore
10.00
自引率
1.90%
发文量
496
审稿时长
28 weeks
期刊介绍: Bridging physiology and cellular medicine, and molecular biology and molecular therapeutics, Journal of Cellular and Molecular Medicine publishes basic research that furthers our understanding of the cellular and molecular mechanisms of disease and translational studies that convert this knowledge into therapeutic approaches.
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