语义-空间特征融合皮层表面解析:具有边界对比损失的尺度统一空间学习网络。

IF 2.6 4区 医学 Q2 COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
Hailiang Ye, Siqi Liu, Ming Li, Houying Zhu, Feilong Cao
{"title":"语义-空间特征融合皮层表面解析:具有边界对比损失的尺度统一空间学习网络。","authors":"Hailiang Ye, Siqi Liu, Ming Li, Houying Zhu, Feilong Cao","doi":"10.1007/s11517-024-03242-5","DOIUrl":null,"url":null,"abstract":"<p><p>The cortical surface parcellation provides prior guidance for studying mental disorders and human cognition. Graph neural networks (GNNs) have gained popularity in this task to preserve its spatial structure. However, previous GNNs struggled to effectively exploit the information contained in the complex spatial structure of the cortical surface and generally encountered an uneven node distribution issue. Meanwhile, labeling boundary nodes was also identified as a widespread problem in this task. Accordingly, this paper develops a scale-unified spatial learning network with a boundary contrastive loss (SSLNet) for cortical surface parcellation. Its core is the scale-unified spatial learning module. It devises neighbor feature extraction and aggregation strategies by fully integrating spatial coordinates and semantic structure to learn effective spatial features of local neighborhoods. More importantly, spatial scale unification is incorporated into this module to mitigate the negative effect on spatial learning caused by node distribution differences among local areas. Additionally, a universal boundary contrastive loss is constructed, enhancing the feature discriminability of boundary nodes by constraining them to be close to the same class nodes and apart from different class nodes in the feature space. It considerably improves boundary performance without increasing parameters or changing the network structure. Experiments regarding public Mindboggle demonstrate that the dice score and accuracy of SSLNet achieve <math><mrow><mn>89.8</mn> <mo>%</mo></mrow> </math> and <math><mrow><mn>90.89</mn> <mo>%</mo></mrow> </math> , respectively, surpassing existing methods.</p>","PeriodicalId":49840,"journal":{"name":"Medical & Biological Engineering & Computing","volume":" ","pages":""},"PeriodicalIF":2.6000,"publicationDate":"2024-11-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Semantic-spatial feature-fused cortical surface parcellation: a scale-unified spatial learning network with boundary contrastive loss.\",\"authors\":\"Hailiang Ye, Siqi Liu, Ming Li, Houying Zhu, Feilong Cao\",\"doi\":\"10.1007/s11517-024-03242-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>The cortical surface parcellation provides prior guidance for studying mental disorders and human cognition. Graph neural networks (GNNs) have gained popularity in this task to preserve its spatial structure. However, previous GNNs struggled to effectively exploit the information contained in the complex spatial structure of the cortical surface and generally encountered an uneven node distribution issue. Meanwhile, labeling boundary nodes was also identified as a widespread problem in this task. Accordingly, this paper develops a scale-unified spatial learning network with a boundary contrastive loss (SSLNet) for cortical surface parcellation. Its core is the scale-unified spatial learning module. It devises neighbor feature extraction and aggregation strategies by fully integrating spatial coordinates and semantic structure to learn effective spatial features of local neighborhoods. More importantly, spatial scale unification is incorporated into this module to mitigate the negative effect on spatial learning caused by node distribution differences among local areas. Additionally, a universal boundary contrastive loss is constructed, enhancing the feature discriminability of boundary nodes by constraining them to be close to the same class nodes and apart from different class nodes in the feature space. It considerably improves boundary performance without increasing parameters or changing the network structure. Experiments regarding public Mindboggle demonstrate that the dice score and accuracy of SSLNet achieve <math><mrow><mn>89.8</mn> <mo>%</mo></mrow> </math> and <math><mrow><mn>90.89</mn> <mo>%</mo></mrow> </math> , respectively, surpassing existing methods.</p>\",\"PeriodicalId\":49840,\"journal\":{\"name\":\"Medical & Biological Engineering & Computing\",\"volume\":\" \",\"pages\":\"\"},\"PeriodicalIF\":2.6000,\"publicationDate\":\"2024-11-16\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Medical & Biological Engineering & Computing\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://doi.org/10.1007/s11517-024-03242-5\",\"RegionNum\":4,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Medical & Biological Engineering & Computing","FirstCategoryId":"5","ListUrlMain":"https://doi.org/10.1007/s11517-024-03242-5","RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
引用次数: 0

摘要

皮层表面划分为研究精神障碍和人类认知提供了先验指导。图神经网络(GNN)因保留了皮层的空间结构而在这项任务中大受欢迎。然而,以往的图神经网络难以有效利用大脑皮层表面复杂空间结构中包含的信息,普遍存在节点分布不均的问题。同时,标注边界节点也是这项任务中普遍存在的问题。因此,本文开发了一种带有边界对比损失的尺度统一空间学习网络(SSLNet),用于皮层表面标注。其核心是尺度统一空间学习模块。它通过充分整合空间坐标和语义结构来设计邻域特征提取和聚合策略,从而学习局部邻域的有效空间特征。更重要的是,该模块采用了空间尺度统一技术,以减轻局部区域节点分布差异对空间学习的负面影响。此外,还构建了一个通用的边界对比损失,通过限制边界节点在特征空间中靠近同类节点和远离不同类节点来增强边界节点的特征可辨别性。它在不增加参数或改变网络结构的情况下,大大提高了边界性能。公共 Mindboggle 实验表明,SSLNet 的骰子得分和准确率分别达到 89.8 % 和 90.89 %,超过了现有方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Semantic-spatial feature-fused cortical surface parcellation: a scale-unified spatial learning network with boundary contrastive loss.

The cortical surface parcellation provides prior guidance for studying mental disorders and human cognition. Graph neural networks (GNNs) have gained popularity in this task to preserve its spatial structure. However, previous GNNs struggled to effectively exploit the information contained in the complex spatial structure of the cortical surface and generally encountered an uneven node distribution issue. Meanwhile, labeling boundary nodes was also identified as a widespread problem in this task. Accordingly, this paper develops a scale-unified spatial learning network with a boundary contrastive loss (SSLNet) for cortical surface parcellation. Its core is the scale-unified spatial learning module. It devises neighbor feature extraction and aggregation strategies by fully integrating spatial coordinates and semantic structure to learn effective spatial features of local neighborhoods. More importantly, spatial scale unification is incorporated into this module to mitigate the negative effect on spatial learning caused by node distribution differences among local areas. Additionally, a universal boundary contrastive loss is constructed, enhancing the feature discriminability of boundary nodes by constraining them to be close to the same class nodes and apart from different class nodes in the feature space. It considerably improves boundary performance without increasing parameters or changing the network structure. Experiments regarding public Mindboggle demonstrate that the dice score and accuracy of SSLNet achieve 89.8 % and 90.89 % , respectively, surpassing existing methods.

求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
Medical & Biological Engineering & Computing
Medical & Biological Engineering & Computing 医学-工程:生物医学
CiteScore
6.00
自引率
3.10%
发文量
249
审稿时长
3.5 months
期刊介绍: Founded in 1963, Medical & Biological Engineering & Computing (MBEC) continues to serve the biomedical engineering community, covering the entire spectrum of biomedical and clinical engineering. The journal presents exciting and vital experimental and theoretical developments in biomedical science and technology, and reports on advances in computer-based methodologies in these multidisciplinary subjects. The journal also incorporates new and evolving technologies including cellular engineering and molecular imaging. MBEC publishes original research articles as well as reviews and technical notes. Its Rapid Communications category focuses on material of immediate value to the readership, while the Controversies section provides a forum to exchange views on selected issues, stimulating a vigorous and informed debate in this exciting and high profile field. MBEC is an official journal of the International Federation of Medical and Biological Engineering (IFMBE).
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信