Papilio 的基因组进化和水平基因转移模式。

IF 3.4 2区生物学 Q2 BIOTECHNOLOGY & APPLIED MICROBIOLOGY

Genomics Pub Date : 2024-11-01 DOI:10.1016/j.ygeno.2024.110956

Jiajia Wang, Yunfei Wu, Linxin Zhu, Kaixin Guo, Shichen Gao, Yan Dong

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引用次数: 0

摘要

以生态和表型多样性著称的雉鸡属是一个宝贵的进化研究模型。本研究对 11 个蝶形目物种进行了基因组比较分析，发现了物种特异性基因家族的扩展，包括与昆虫解毒有关的 UDP- 葡糖基转移酶 2 基因，该基因在多蝶形目中的扩展尤为明显。我们的分析还揭示了从 76 个微生物物种中获得的 199 个水平基因转移（HGT）基因，假单胞菌和芽孢杆菌是这些基因组中常见的 HGT 供体。此外，我们还研究了九个 ABC 转运体亚家族的进化模式，发现了基因家族进化与环境适应之间的潜在联系。这项研究为我们了解蝶属的进化关系和基因组适应性提供了新的视角，有助于更广泛的蝴蝶进化研究。

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Genomic evolution and patterns of horizontal gene transfer in Papilio

The Papilio genus, known for its ecological and phenotypic diversity, is a valuable model for evolutionary studies. This study conducted a comparative genomic analysis of 11 Papilio species, revealing species-specific gene family expansions, including the UDP-glucosyltransferase 2 gene associated with insect detoxification, particularly expanding in Papilio polyxenes. Our analysis also revealed 199 horizontal gene transfer (HGT) acquired genes from 76 microbial species, with Pseudomonadota and Bacillota as common HGT donors across these genomes. Furthermore, we examined the evolutionary patterns of nine ABC transporter subfamilies, uncovering potential links between gene family evolution and environmental adaptation. This study provides new insights into evolutionary relationships and genomic adaptations within the Papilio genus, contributing to broader butterfly evolutionary research.

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来源期刊

Genomics 生物-生物工程与应用微生物

CiteScore

9.60

自引率

2.30%

发文量

260

审稿时长

60 days

期刊介绍： Genomics is a forum for describing the development of genome-scale technologies and their application to all areas of biological investigation. As a journal that has evolved with the field that carries its name, Genomics focuses on the development and application of cutting-edge methods, addressing fundamental questions with potential interest to a wide audience. Our aim is to publish the highest quality research and to provide authors with rapid, fair and accurate review and publication of manuscripts falling within our scope.