基于生物信息学和机器学习分析,确定 TXN 和 F5 为重症哮喘的新型诊断基因生物标记物。

IF 3.3 4区 医学 Q3 IMMUNOLOGY
Autoimmunity Pub Date : 2024-12-01 Epub Date: 2024-11-12 DOI:10.1080/08916934.2024.2427085
Lu Shou, Haidong He, Yi Wei, Xianrong Xu, Wenmin Wang, Jisheng Zheng
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引用次数: 0

摘要

哮喘对人类健康构成重大威胁。本研究旨在确定重症哮喘的遗传标记,并分析关键基因与免疫浸润之间的关系。首先从 GEO 数据集中下载训练集 GSE69683 和验证集 GSE137268,筛选差异表达基因(DEGs)。使用 SVM-RFE 分析和 LASSO 回归模型筛选关键基因,并使用 CIBERSORT 评估样本中的免疫浸润情况。本研究共鉴定出20个DEGs,主要富集于淋巴结样受体、b细胞受体和中性粒细胞胞外陷阱通路。比较验证集 GSE137268 发现硫氧还蛋白(TXN)和凝血因子 V(F5)是重症哮喘的诊断标志物。CIBERSORT 分析显示,TXN 和 F5 与多种免疫细胞浸润有关。此外,我们还在转录水平上发现了可能调控 F5 和 TXN 的 miRNA 和 TF,并发现几种常用药物可能通过靶向 F5 和 TXN 发挥治疗作用。综上所述,TXN和F5可能是重症哮喘发病的关键基因,与免疫浸润有关。我们的研究有助于更好地了解哮喘的发病机制,并为临床治疗提供新思路。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Identification of TXN and F5 as novel diagnostic gene biomarkers of the severe asthma based on bioinformatics and machine learning analysis.

Asthma poses a major threat to human health. The aim of this study was to identify genetic markers of severe asthma and analyze the relationship between key genes and immune infiltration. Differentially expressed genes (DEGs) were first screened by downloading the training set GSE69683 and validation set GSE137268 from the GEO dataset. SVM-RFE analysis and the LASSO regression model were used to screen key genes, and CIBERSORT was used to assess immune infiltration in the samples. A total of 20 DEGs were identified in this study, mainly enriched for lymph node-like receptors, b-cell receptors, and neutrophil extracellular trap pathway. Comparative validation set GSE137268 identified thioredoxin (TXN) and coagulation factor V (F5) were identified as diagnostic markers of severe asthma. CIBERSORT analysis revealed that TXN and F5 are associated with multiple immune cell infiltrates. In addition, we identified miRNA and TF at the transcriptional level that may regulate F5 and TXN, and found that several commonly used drugs may exert therapeutic effects by targeting F5 and TXN. Taken together, TXN and F5 may be key genes in the development of severe asthma and are associated with immune infiltration. Our study can help to better understand the pathogenesis of asthma and provide new ideas for clinical treatment.

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来源期刊
Autoimmunity
Autoimmunity 医学-免疫学
CiteScore
5.70
自引率
8.60%
发文量
59
审稿时长
6-12 weeks
期刊介绍: Autoimmunity is an international, peer reviewed journal that publishes articles on cell and molecular immunology, immunogenetics, molecular biology and autoimmunity. Current understanding of immunity and autoimmunity is being furthered by the progress in new molecular sciences that has recently been little short of spectacular. In addition to the basic elements and mechanisms of the immune system, Autoimmunity is interested in the cellular and molecular processes associated with systemic lupus erythematosus, rheumatoid arthritis, Sjogren syndrome, type I diabetes, multiple sclerosis and other systemic and organ-specific autoimmune disorders. The journal reflects the immunology areas where scientific progress is most rapid. It is a valuable tool to basic and translational researchers in cell biology, genetics and molecular biology of immunity and autoimmunity.
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