数据和分子指纹驱动的卤素键合机器学习方法

IF 5.6 2区 化学 Q1 CHEMISTRY, MEDICINAL
Daniel P. Devore,  and , Kevin L. Shuford*, 
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引用次数: 0

摘要

预测卤素键强度和卤素键(XB)供体性质的能力对药物化学和材料科学具有重要作用。XB 通常是通过昂贵的 ab initio 方法计算得出的。因此,开发快速、准确、高效的性质预测工具和技术变得越来越重要。在本文中,我们采用了三种机器学习模型,通过主卤原子对 XB 给体和复合物进行分类,并通过分子指纹和基于数据的分析预测 XB 复合物的静电位面最大点(VS,max)值和相互作用强度。在预测卤代苯和卤代乙炔基苯体系的静电位面最大值时,指纹分析产生的均方根误差分别约为 7.5 和 5.5 kcal mol-1。不过,对 XB 给体和氨受体之间结合能的预测结果表明,与密度泛函理论(DFT)计算的能量相比,误差在 1 kcal mol-1 以内。与指纹分析相比,预计算的 DFT 数据可以做出更准确的预测。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Data and Molecular Fingerprint-Driven Machine Learning Approaches to Halogen Bonding

Data and Molecular Fingerprint-Driven Machine Learning Approaches to Halogen Bonding

The ability to predict the strength of halogen bonds and properties of halogen bond (XB) donors has significant utility for medicinal chemistry and materials science. XBs are typically calculated through expensive ab initio methods. Thus, the development of tools and techniques for fast, accurate, and efficient property predictions has become increasingly more important. Herein, we employ three machine learning models to classify the XB donors and complexes by their principal halogen atom as well as predict the values of the maximum point on the electrostatic potential surface (VS,max) and interaction strength of the XB complexes through a molecular fingerprint and data-based analysis. The fingerprint analysis produces a root-mean-square error of ca. 7.5 and ca. 5.5 kcal mol–1 while predicting the VS,max for the halobenzene and haloethynylbenzene systems, respectively. However, the prediction of the binding energy between the XB donors and ammonia acceptor is shown to be within 1 kcal mol–1 of the density functional theory (DFT)-calculated energy. More accurate predictions can be made from the precalculated DFT data when compared to the fingerprint analysis.

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来源期刊
CiteScore
9.80
自引率
10.70%
发文量
529
审稿时长
1.4 months
期刊介绍: The Journal of Chemical Information and Modeling publishes papers reporting new methodology and/or important applications in the fields of chemical informatics and molecular modeling. Specific topics include the representation and computer-based searching of chemical databases, molecular modeling, computer-aided molecular design of new materials, catalysts, or ligands, development of new computational methods or efficient algorithms for chemical software, and biopharmaceutical chemistry including analyses of biological activity and other issues related to drug discovery. Astute chemists, computer scientists, and information specialists look to this monthly’s insightful research studies, programming innovations, and software reviews to keep current with advances in this integral, multidisciplinary field. As a subscriber you’ll stay abreast of database search systems, use of graph theory in chemical problems, substructure search systems, pattern recognition and clustering, analysis of chemical and physical data, molecular modeling, graphics and natural language interfaces, bibliometric and citation analysis, and synthesis design and reactions databases.
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