催化初始反马尔科夫尼科夫环化反应的倍半萜合成酶 Caryolan-1-ol Synthase 的晶体结构

IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Ramasamy P. Kumar, Jason O. Matos, Brandon Y. Black, William H. Ellenburg, Jiahua Chen, MacKenzie Patterson, Jacob A. Gehtman, Douglas L. Theobald*, Isaac J. Krauss* and Daniel D. Oprian*, 
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引用次数: 0

摘要

为了继续了解萜烯合成酶催化初始反马尔科夫尼科夫环化反应的反应机理,我们解析了来自灰葡萄孢链霉菌的 (+)-caryolan-1-ol 合成酶(CS)的 X 射线晶体结构,在该酶的活性位点结合了和未结合非活性类似物二磷酸法呢基酯(FPP)底物--2-氟法呢基二磷酸酯(2FFPP)。CS-2FFPP 结构的分辨率为 2.65 Å,显示配体呈拉长取向,无法进行初始环化以形成 C1-C11 键。耐人寻味的是,apo CS 结构(2.2 Å)的活性位点也有电子密度,在这种情况下,一个卷曲的四甘醇分子(可能是从结晶介质中引入的)很好地拟合了电子密度。一个法尼烯分子也很好地拟合了电子密度,这表明该结构可能模仿了反应坐标上的一个中间体。与 2FFPP 结构相比,四甘醇的卷曲构象伴随着一些活性位点残基的急剧旋转。最值得注意的是,W56 和 F183 在 2FFPP 复合物和辅酶结构之间发生了 90° 的旋转,这表明这些残基提供了相互作用,有助于将四甘醇分子卷曲在活性位点上,进而也可能在正常的环化反应过程中卷曲 FPP 底物的衍生物。为支持这一观点,研究人员观察到 CS W56L 和 F183A 变体催化 FPP 底物的 C1-C11 环化反应的能力受到严重限制,而产生的主要是以法尼醇、β-法尼烯和橙花叔醇为主的无环萜烯产品。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Crystal Structure of Caryolan-1-ol Synthase, a Sesquiterpene Synthase Catalyzing an Initial Anti-Markovnikov Cyclization Reaction

Crystal Structure of Caryolan-1-ol Synthase, a Sesquiterpene Synthase Catalyzing an Initial Anti-Markovnikov Cyclization Reaction

In a continuing effort to understand reaction mechanisms of terpene synthases catalyzing initial anti-Markovnikov cyclization reactions, we solved the X-ray crystal structure of (+)-caryolan-1-ol synthase (CS) from Streptomyces griseus, with and without an inactive analog of the farnesyl diphosphate (FPP) substrate, 2-fluorofarnesyl diphosphate (2FFPP), bound in the active site of the enzyme. The CS-2FFPP structure was solved to 2.65 Å resolution and showed the ligand in an elongated orientation, incapable of undergoing the initial cyclization event to form a C1–C11 bond. Intriguingly, the apo CS structure (2.2 Å) also had electron density in the active site, in this case, well fit by a curled-up tetraethylene glycol molecule recruited, presumably, from the crystallization medium. The density was also well fit by a molecule of farnesene suggesting that the structure may mimic an intermediate along the reaction coordinate. The curled-up conformation of tetraethylene glycol was accompanied by dramatic rotation of some active-site residues in comparison to the 2FFPP-structure. Most notably, W56 and F183 undergo 90° rotations between the 2FFPP complex and apoenzyme structures, suggesting that these residues provide interactions that help curl the tetraethylene glycol molecule in the active site, and by extension perhaps also a derivative of the FPP substrate in the normal course of the cyclization reaction. In support of this proposal, the CS W56L and F183A variants were observed to be severely restricted in their ability to catalyze C1–C11 cyclization of the FPP substrate and instead produced predominantly acyclic terpene products dominated by farnesol, β-farnesene, and nerolidol.

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来源期刊
Biochemistry Biochemistry
Biochemistry Biochemistry 生物-生化与分子生物学
CiteScore
5.50
自引率
3.40%
发文量
336
审稿时长
1-2 weeks
期刊介绍: Biochemistry provides an international forum for publishing exceptional, rigorous, high-impact research across all of biological chemistry. This broad scope includes studies on the chemical, physical, mechanistic, and/or structural basis of biological or cell function, and encompasses the fields of chemical biology, synthetic biology, disease biology, cell biology, nucleic acid biology, neuroscience, structural biology, and biophysics. In addition to traditional Research Articles, Biochemistry also publishes Communications, Viewpoints, and Perspectives, as well as From the Bench articles that report new methods of particular interest to the biological chemistry community.
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