{"title":"容积综合分类指数:基于体素形态测量和机器学习的创伤后应激障碍可解释生物标志物。","authors":"Yulong Jia, Beining Yang, Haotian Xin, Qunya Qi, Yu Wang, Liyuan Lin, Yingying Xie, Chaoyang Huang, Jie Lu, Wen Qin, Nan Chen","doi":"10.1007/s10278-024-01313-5","DOIUrl":null,"url":null,"abstract":"<p><p>PTSD is a complex mental health condition triggered by individuals' traumatic experiences, with long-term and broad impacts on sufferers' psychological health and quality of life. Despite decades of research providing partial understanding of the pathobiological aspects of PTSD, precise neurobiological markers and imaging indicators remain challenging to pinpoint. This study employed VBM analysis and machine learning algorithms to investigate structural brain changes in PTSD patients. Data were sourced ADNI-DoD database for PTSD cases and from the ADNI database for healthy controls. Various machine learning models, including SVM, RF, and LR, were utilized for classification. Additionally, the VICI was proposed to enhance model interpretability, incorporating SHAP analysis. The association between PTSD risk genes and VICI values was also explored through gene expression data analysis. Among the tested machine learning algorithms, RF emerged as the top performer, achieving high accuracy in classifying PTSD patients. Structural brain abnormalities in PTSD patients were predominantly observed in prefrontal areas compared to healthy controls. The proposed VICI demonstrated classification efficacy comparable to the optimized RF model, indicating its potential as a simplified diagnostic tool. Analysis of gene expression data revealed significant associations between PTSD risk genes and VICI values, implicating synaptic integrity and neural development regulation. This study reveals neuroimaging and genetic characteristics of PTSD, highlighting the potential of VBM analysis and machine learning models in diagnosis and prognosis. The VICI offers a promising approach to enhance model interpretability and guide clinical decision-making. These findings contribute to a better understanding of the pathophysiological mechanisms of PTSD and provide new avenues for future diagnosis and treatment.</p>","PeriodicalId":516858,"journal":{"name":"Journal of imaging informatics in medicine","volume":" ","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-11-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Volumetric Integrated Classification Index: An Integrated Voxel-Based Morphometry and Machine Learning Interpretable Biomarker for Post-Traumatic Stress Disorder.\",\"authors\":\"Yulong Jia, Beining Yang, Haotian Xin, Qunya Qi, Yu Wang, Liyuan Lin, Yingying Xie, Chaoyang Huang, Jie Lu, Wen Qin, Nan Chen\",\"doi\":\"10.1007/s10278-024-01313-5\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>PTSD is a complex mental health condition triggered by individuals' traumatic experiences, with long-term and broad impacts on sufferers' psychological health and quality of life. Despite decades of research providing partial understanding of the pathobiological aspects of PTSD, precise neurobiological markers and imaging indicators remain challenging to pinpoint. This study employed VBM analysis and machine learning algorithms to investigate structural brain changes in PTSD patients. Data were sourced ADNI-DoD database for PTSD cases and from the ADNI database for healthy controls. Various machine learning models, including SVM, RF, and LR, were utilized for classification. Additionally, the VICI was proposed to enhance model interpretability, incorporating SHAP analysis. The association between PTSD risk genes and VICI values was also explored through gene expression data analysis. Among the tested machine learning algorithms, RF emerged as the top performer, achieving high accuracy in classifying PTSD patients. Structural brain abnormalities in PTSD patients were predominantly observed in prefrontal areas compared to healthy controls. The proposed VICI demonstrated classification efficacy comparable to the optimized RF model, indicating its potential as a simplified diagnostic tool. Analysis of gene expression data revealed significant associations between PTSD risk genes and VICI values, implicating synaptic integrity and neural development regulation. This study reveals neuroimaging and genetic characteristics of PTSD, highlighting the potential of VBM analysis and machine learning models in diagnosis and prognosis. The VICI offers a promising approach to enhance model interpretability and guide clinical decision-making. 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引用次数: 0
摘要
创伤后应激障碍是一种由个人创伤经历引发的复杂心理疾病,对患者的心理健康和生活质量有着长期而广泛的影响。尽管数十年的研究对创伤后应激障碍的病理生物学方面有了部分了解,但精确的神经生物学标记和成像指标仍难以确定。本研究采用 VBM 分析和机器学习算法来研究创伤后应激障碍患者的大脑结构变化。创伤后应激障碍病例的数据来源于 ADNI-DoD 数据库,健康对照组的数据来源于 ADNI 数据库。利用 SVM、RF 和 LR 等多种机器学习模型进行分类。此外,为了提高模型的可解释性,还提出了结合 SHAP 分析的 VICI。此外,还通过基因表达数据分析探讨了创伤后应激障碍风险基因与 VICI 值之间的关联。在测试的机器学习算法中,RF表现最佳,对创伤后应激障碍患者的分类准确率很高。与健康对照组相比,创伤后应激障碍患者的大脑结构异常主要出现在前额叶区域。所提出的 VICI 的分类效果与优化的 RF 模型相当,这表明它具有作为简化诊断工具的潜力。基因表达数据分析显示,创伤后应激障碍风险基因与 VICI 值之间存在显著关联,这与突触完整性和神经发育调控有关。这项研究揭示了创伤后应激障碍的神经影像学和遗传学特征,凸显了 VBM 分析和机器学习模型在诊断和预后方面的潜力。VICI 为增强模型的可解释性和指导临床决策提供了一种很有前景的方法。这些发现有助于更好地理解创伤后应激障碍的病理生理机制,并为未来的诊断和治疗提供了新的途径。
Volumetric Integrated Classification Index: An Integrated Voxel-Based Morphometry and Machine Learning Interpretable Biomarker for Post-Traumatic Stress Disorder.
PTSD is a complex mental health condition triggered by individuals' traumatic experiences, with long-term and broad impacts on sufferers' psychological health and quality of life. Despite decades of research providing partial understanding of the pathobiological aspects of PTSD, precise neurobiological markers and imaging indicators remain challenging to pinpoint. This study employed VBM analysis and machine learning algorithms to investigate structural brain changes in PTSD patients. Data were sourced ADNI-DoD database for PTSD cases and from the ADNI database for healthy controls. Various machine learning models, including SVM, RF, and LR, were utilized for classification. Additionally, the VICI was proposed to enhance model interpretability, incorporating SHAP analysis. The association between PTSD risk genes and VICI values was also explored through gene expression data analysis. Among the tested machine learning algorithms, RF emerged as the top performer, achieving high accuracy in classifying PTSD patients. Structural brain abnormalities in PTSD patients were predominantly observed in prefrontal areas compared to healthy controls. The proposed VICI demonstrated classification efficacy comparable to the optimized RF model, indicating its potential as a simplified diagnostic tool. Analysis of gene expression data revealed significant associations between PTSD risk genes and VICI values, implicating synaptic integrity and neural development regulation. This study reveals neuroimaging and genetic characteristics of PTSD, highlighting the potential of VBM analysis and machine learning models in diagnosis and prognosis. The VICI offers a promising approach to enhance model interpretability and guide clinical decision-making. These findings contribute to a better understanding of the pathophysiological mechanisms of PTSD and provide new avenues for future diagnosis and treatment.