He Ren, Danlei Zhang, Mingzhi Lu, Zhen Chen, Yiqiao Xing
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Leave-one-SNP-out analysis was used to identify SNPs with potential impact.</p><p><strong>Results: </strong>IVW results revealed that elevated levels of Tumor Necrosis Factor Alpha (TNF-α), Macrophage Inflammatory Protein-1a (MIP1a), and Monokine Induced by Gamma Interferon (MIG) were associated with higher RP risk (OR = 2.358, <i>p</i> = 0.050; OR = 2.583, <i>p</i> = 0.013; OR = 1.851, <i>p</i> = 0.015), while elevated levels of Interleukin-16 (IL-16) were associated with reduced RP risk (OR = 0.723, <i>p</i> = 0.019). The results of heterogeneity and pleiotropy (<i>p</i> > 0.05) confirmed there was no pleiotropy and heterogeneity in our IVW analysis. The association of TNF-α, MIP1a, MIG and IL-16 with RP from sensitivity analyses using these two sets of restricted IVs remained stable.</p><p><strong>Conclusion: </strong>Our study provides evidence of potential causal relationships between several circulating cytokine levels and RP. Elevated levels of TNF-α, MIP1a, and MIG are associated with a higher risk of RP, while elevated levels of IL-16 are associated with a lower risk of RP. These cytokines may be novel biomarkers and therapeutic targets for RP.</p>","PeriodicalId":19594,"journal":{"name":"Ophthalmic Genetics","volume":null,"pages":null},"PeriodicalIF":1.2000,"publicationDate":"2024-10-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Genetically predicted inflammatory cytokine levels and risk of retinitis pigmentosa.\",\"authors\":\"He Ren, Danlei Zhang, Mingzhi Lu, Zhen Chen, Yiqiao Xing\",\"doi\":\"10.1080/13816810.2024.2414081\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><strong>Purpose: </strong>This study aims to estimate the potential causal relationship between genetically predicted levels of inflammatory cytokine and retinitis pigmentosa (RP) by performing Mendelian randomization (MR).</p><p><strong>Methods: </strong>Single nucleotide polymorphisms (SNPs) were identified as instrumental variables (IVs) from publicly available genome-wide association study datasets. Inverse-variance weighted (IVW), MR-Egger, weighted median, simple mode, and weighted mode methods were applied in this MR analysis. IVW and MR-Egger were used to confirm heterogeneity and pleiotropy of identified IVs. Leave-one-SNP-out analysis was used to identify SNPs with potential impact.</p><p><strong>Results: </strong>IVW results revealed that elevated levels of Tumor Necrosis Factor Alpha (TNF-α), Macrophage Inflammatory Protein-1a (MIP1a), and Monokine Induced by Gamma Interferon (MIG) were associated with higher RP risk (OR = 2.358, <i>p</i> = 0.050; OR = 2.583, <i>p</i> = 0.013; OR = 1.851, <i>p</i> = 0.015), while elevated levels of Interleukin-16 (IL-16) were associated with reduced RP risk (OR = 0.723, <i>p</i> = 0.019). The results of heterogeneity and pleiotropy (<i>p</i> > 0.05) confirmed there was no pleiotropy and heterogeneity in our IVW analysis. 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引用次数: 0
摘要
目的:本研究旨在通过孟德尔随机化(Mendelian randomization,MR)估算炎性细胞因子的遗传预测水平与视网膜色素变性(RP)之间的潜在因果关系:方法:从公开的全基因组关联研究数据集中确定单核苷酸多态性(SNPs)作为工具变量(IVs)。反方差加权法(IVW)、MR-Egger 法、加权中位法、简单模式法和加权模式法被应用于该 MR 分析中。IVW和MR-Egger用于确认已识别IV的异质性和多义性。留一SNP-out分析用于确定具有潜在影响的SNPs:IVW结果显示,肿瘤坏死因子α(TNF-α)、巨噬细胞炎症蛋白-1a(MIP1a)和γ干扰素诱导的单克隆(MIG)水平升高与较高的RP风险相关(OR = 2.358,p = 0.050;OR = 2.583,p = 0.013;OR = 1.851,p = 0.015),而白细胞介素-16(IL-16)水平升高与 RP 风险降低相关(OR = 0.723,p = 0.019)。异质性和多重性结果(p > 0.05)证实,我们的 IVW 分析不存在多重性和异质性。使用这两组限制性IV进行的敏感性分析结果显示,TNF-α、MIP1a、MIG和IL-16与RP的相关性保持稳定:我们的研究为多种循环细胞因子水平与 RP 之间的潜在因果关系提供了证据。TNF-α、MIP1a 和 MIG 水平升高与较高的 RP 风险相关,而 IL-16 水平升高与较低的 RP 风险相关。这些细胞因子可能是 RP 的新型生物标志物和治疗靶点。
Genetically predicted inflammatory cytokine levels and risk of retinitis pigmentosa.
Purpose: This study aims to estimate the potential causal relationship between genetically predicted levels of inflammatory cytokine and retinitis pigmentosa (RP) by performing Mendelian randomization (MR).
Methods: Single nucleotide polymorphisms (SNPs) were identified as instrumental variables (IVs) from publicly available genome-wide association study datasets. Inverse-variance weighted (IVW), MR-Egger, weighted median, simple mode, and weighted mode methods were applied in this MR analysis. IVW and MR-Egger were used to confirm heterogeneity and pleiotropy of identified IVs. Leave-one-SNP-out analysis was used to identify SNPs with potential impact.
Results: IVW results revealed that elevated levels of Tumor Necrosis Factor Alpha (TNF-α), Macrophage Inflammatory Protein-1a (MIP1a), and Monokine Induced by Gamma Interferon (MIG) were associated with higher RP risk (OR = 2.358, p = 0.050; OR = 2.583, p = 0.013; OR = 1.851, p = 0.015), while elevated levels of Interleukin-16 (IL-16) were associated with reduced RP risk (OR = 0.723, p = 0.019). The results of heterogeneity and pleiotropy (p > 0.05) confirmed there was no pleiotropy and heterogeneity in our IVW analysis. The association of TNF-α, MIP1a, MIG and IL-16 with RP from sensitivity analyses using these two sets of restricted IVs remained stable.
Conclusion: Our study provides evidence of potential causal relationships between several circulating cytokine levels and RP. Elevated levels of TNF-α, MIP1a, and MIG are associated with a higher risk of RP, while elevated levels of IL-16 are associated with a lower risk of RP. These cytokines may be novel biomarkers and therapeutic targets for RP.
期刊介绍:
Ophthalmic Genetics accepts original papers, review articles and short communications on the clinical and molecular genetic aspects of ocular diseases.