An enhanced method for reconstruction of full SIF spectrum for near-ground measurements

Recently the applications of remotely sensed Solar-Induced chlorophyll Fluorescence (SIF) in the study of photosynthesis, stress conditions, and gross primary production have increased significantly. The full SIF spectrum spans over a spectral region of 650 ∼ 850 nm with two characteristic peaks around 685 nm and 740 nm. Over recent decades, many retrieval algorithms have been developed to estimate SIF at Top-Of-Canopy (TOC) using in-situ measurements of solar irradiance and canopy radiance spectra. Although the majority of retrieval methods retrieve SIF at a narrow spectral window, there exists a potential for retrieval of SIF in the full emission spectrum. Moreover, solar irradiance and canopy radiance spectra should ideally be measured at the same time but are usually measured sequentially with a certain time lag, raising potential errors in SIF retrieval. In this study, an enhanced retrieval algorithm of the full SIF spectrum at TOC is proposed. The proposed algorithm attempts to minimize the errors owing to time mismatch in measurements of solar irradiance and canopy radiance spectra. As an improvement to the previous algorithm (advanced Fluorescence Spectrum Reconstruction, aFSR), this proposed algorithm (aFSR-SVE) models the SIF-free contribution with principal components using the singular value decomposition technique. The optimal parameter settings in the forward model were determined for the experimental data collected by spectrometers used in the study. Firstly, the proposed algorithm was used to reconstruct full SIF spectrum for simulated data. The results were compared with known reference SIF values. After achieving satisfying results from simulated data, the proposed algorithm was compared with retrievals from established algorithms using experimental data. The results show improved SIF retrieval accuracy, without the need to simultaneously measure solar irradiance and canopy radiance spectra. The retrieval values comply with the results of previous algorithms in terms of spectral shape, diurnal trend, and temporal variations. The induced errors in SIF retrievals due to non-simultaneous measurements of solar irradiance and canopy radiance spectra were also investigated and the proposed algorithm was found to be less prone to such errors. Hence, the proposed algorithm is an improvement in reconstructing the full SIF spectrum with near-ground measurements. With the help of the proposed algorithm, field measurements using sequential systems and automated measurements of multiple targets can be performed effectively as it relaxes the requirement of concurrent measurement of solar irradiance and canopy radiance spectra. For future work, the applicability of this method can be investigated under more variable illumination conditions, like high cirrus clouds, passing clouds or persistent thin clouds.