Mikhail Fufin, Vladimir Makarov, Vadim I Alfimov, Vladislav V Ananev, Anna Ananeva
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引用次数: 0
摘要
背景:肺叶分割和肺裂分割在肺部疾病的临床诊断和评估中都很有用。由于许多疾病都与特定的肺叶有关,因此对每个肺叶进行单独量化往往具有临床意义。裂隙分割对于很大一部分肺叶分割方法以及评估裂隙完整性都很重要,因为对裂隙完整性的量化要求越来越高:方法:我们提出了一种基于 U-Net 和 PAN 模型的肺部计算机断层扫描(CT)全自动肺裂隙分割方法,该方法在数据预处理中使用了棒的衍射(DoS)滤波器。此外,还使用了模型集合来提高预测准确性:我们的方法在右肺裂孔和左肺裂孔的 F1 分数分别为 0.916 和 0.933,明显高于独立 DoS 的结果(分别为 0.724 和 0.666)。我们还利用裂隙分割进行了肺叶分割。肺叶分割算法的结果接近最先进方法的结果,平均 Dice 得分为 0.989:结论:所提出的方法对肺裂隙的分割效率高,对内存的要求低,适合在这一领域开展涉及快速实验的进一步研究。
Pulmonary Fissure Segmentation in CT Images Using Image Filtering and Machine Learning.
Background: Both lung lobe segmentation and lung fissure segmentation are useful in the clinical diagnosis and evaluation of lung disease. It is often of clinical interest to quantify each lobe separately because many diseases are associated with specific lobes. Fissure segmentation is important for a significant proportion of lung lobe segmentation methods, as well as for assessing fissure completeness, since there is an increasing requirement for the quantification of fissure integrity.
Methods: We propose a method for the fully automatic segmentation of pulmonary fissures on lung computed tomography (CT) based on U-Net and PAN models using a Derivative of Stick (DoS) filter for data preprocessing. Model ensembling is also used to improve prediction accuracy.
Results: Our method achieved an F1 score of 0.916 for right-lung fissures and 0.933 for left-lung fissures, which are significantly higher than the standalone DoS results (0.724 and 0.666, respectively). We also performed lung lobe segmentation using fissure segmentation. The lobe segmentation algorithm shows results close to those of state-of-the-art methods, with an average Dice score of 0.989.
Conclusions: The proposed method segments pulmonary fissures efficiently and have low memory requirements, which makes it suitable for further research in this field involving rapid experimentation.
TomographyMedicine-Radiology, Nuclear Medicine and Imaging
CiteScore
2.70
自引率
10.50%
发文量
222
期刊介绍:
TomographyTM publishes basic (technical and pre-clinical) and clinical scientific articles which involve the advancement of imaging technologies. Tomography encompasses studies that use single or multiple imaging modalities including for example CT, US, PET, SPECT, MR and hyperpolarization technologies, as well as optical modalities (i.e. bioluminescence, photoacoustic, endomicroscopy, fiber optic imaging and optical computed tomography) in basic sciences, engineering, preclinical and clinical medicine.
Tomography also welcomes studies involving exploration and refinement of contrast mechanisms and image-derived metrics within and across modalities toward the development of novel imaging probes for image-based feedback and intervention. The use of imaging in biology and medicine provides unparalleled opportunities to noninvasively interrogate tissues to obtain real-time dynamic and quantitative information required for diagnosis and response to interventions and to follow evolving pathological conditions. As multi-modal studies and the complexities of imaging technologies themselves are ever increasing to provide advanced information to scientists and clinicians.
Tomography provides a unique publication venue allowing investigators the opportunity to more precisely communicate integrated findings related to the diverse and heterogeneous features associated with underlying anatomical, physiological, functional, metabolic and molecular genetic activities of normal and diseased tissue. Thus Tomography publishes peer-reviewed articles which involve the broad use of imaging of any tissue and disease type including both preclinical and clinical investigations. In addition, hardware/software along with chemical and molecular probe advances are welcome as they are deemed to significantly contribute towards the long-term goal of improving the overall impact of imaging on scientific and clinical discovery.