恶性胶质瘤中的人工智能和 Omics。

IF 2.5 4区 生物学 Q3 CELL BIOLOGY
Richa Tambi, Binte Zehra, Aswathy Vijayakumar, Dharana Satsangi, Mohammed Uddin, Bakhrom K Berdiev
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引用次数: 0

摘要

大规模多组学数据的可用性要求开发计算模型,以推断出有价值的生物学见解,从而实施精准医疗。人工智能(AI)指的是一系列计算算法,这些算法正在成为能够整合大规模基因组学、转录组学、蛋白质组学和代谢组学数据的主要工具。机器学习(ML)是健康科学领域最重要的人工智能算法,特别是由于深度学习最近取得的进展,这种算法已经呈现爆炸式增长。虽然人工智能/ML 工具在 GBM 组学中的应用仍处于早期阶段,但全面讨论如何利用人工智能来揭示 GBM 的各个方面(肿瘤内异质性、生物标记物发现、生存预测和治疗优化)对研究人员和临床医生都非常重要。在此,我们旨在回顾过去十年中利用多组学数据研究 GBM 发病机制的不同人工智能技术。我们首先总结了可用于开发人工智能模型的不同类型的 GBM 相关组学资源。然后,我们讨论了多组学数据的各种人工智能应用,以提高 GBM 精准医疗水平。最后,我们讨论了限制其应用的技术和伦理挑战,以及改进其在临床中实施的方法。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Artificial Intelligence and Omics in Malignant Gliomas.

The availability of large scale multi-omics data requires development of computational models to infer valuable biological insights for the implementation of precision medicine. Artificial intelligence (AI) refers to a host of computational algorithms that is becoming a major tool capable of integrating large genomic, transcriptomic, proteomic, and metabolomic data. Machine learning (ML) is the most significant AI algorithm in health sciences have exploded, specifically due to the recent progress made by deep learning. Although the use of AI/ML tools in GBM-omics is still at an early stage, a comprehensive discussion of how AI can be used to unravel various aspects of GBM (intratumor heterogeneity, biomarker discovery, survival prediction, and treatment optimization) would be highly relevant to both researchers and clinicians. Here, we aim to review the different AI-based techniques that have been used to study GBM pathogenesis using multi-omics data over the last decade. We first summarize different types of GBM related omics resources that can be used to develop AI models. We then discuss various AI applications for multi-omics data in order to enhance GBM precision medicine. Finally, we discuss the technical and ethical challenges that limit its application and ways to improve its implementation in clinics.

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来源期刊
Physiological genomics
Physiological genomics 生物-生理学
CiteScore
6.10
自引率
0.00%
发文量
46
审稿时长
4-8 weeks
期刊介绍: The Physiological Genomics publishes original papers, reviews and rapid reports in a wide area of research focused on uncovering the links between genes and physiology at all levels of biological organization. Articles on topics ranging from single genes to the whole genome and their links to the physiology of humans, any model organism, organ, tissue or cell are welcome. Areas of interest include complex polygenic traits preferably of importance to human health and gene-function relationships of disease processes. Specifically, the Journal has dedicated Sections focused on genome-wide association studies (GWAS) to function, cardiovascular, renal, metabolic and neurological systems, exercise physiology, pharmacogenomics, clinical, translational and genomics for precision medicine, comparative and statistical genomics and databases. For further details on research themes covered within these Sections, please refer to the descriptions given under each Section.
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