将 FPR3 作为胶质瘤预后和免疫浸润相关生物标记物的泛癌症分析和实验验证。

IF 2.8 3区 生物学 Q2 GENETICS & HEREDITY
Frontiers in Genetics Pub Date : 2024-10-09 eCollection Date: 2024-01-01 DOI:10.3389/fgene.2024.1466617
Chenglin Ye, Peng Li, Boxu Chen, Yong Mo, Qianrong Huang, Qiuyun Li, Qinhan Hou, Ligen Mo, Jun Yan
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引用次数: 0

摘要

众所周知,甲酰肽受体 3(FPR3)对各种癌症类型的进展都有影响。尽管如此,其在泛癌症数据集中的生物学意义仍有待研究。在这项研究中,我们仔细研究了 FPR3 在不同类型癌症中的表达谱、基因改变、预后意义、免疫相关特征、甲基化状态、肿瘤突变负荷(TMB)和微卫星不稳定性(MSI)。我们利用 TISCH 的单细胞数据确定了与 FPR3 密切相关的免疫细胞。我们利用 TCGA 和 CGGA 数据集的数据对 FPR3 在胶质瘤中的预测意义进行了独立评估,从而开发出了预后提名图。免疫组化和 Western 印迹分析证实了 FPR3 在胶质瘤中的表达。最后,利用 CCK-8 和伤口愈合试验评估了 FPR3 对 GBM 细胞系增殖和转移的影响。在许多癌症类型中,FPR3表达的增加与不良后果、免疫细胞浸润、免疫检查点、TMB和MSI相关。在胶质瘤中,FPR3 是一个显著的风险因素,预后模型能有效预测患者的结果。FPR3在胶质瘤中的潜在生物学相关性得到了证实,它被证明在胶质瘤生长、免疫浸润和转移过程中有重要参与。我们的研究结果表明,FPR3 与肿瘤免疫存在潜在联系,这表明它可以作为胶质瘤的预后指标。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Pan-cancer analysis and experimental validation of FPR3 as a prognostic and immune infiltration-related biomarker for glioma.

Formyl peptide receptor 3 (FPR3) is known to have implications in the progression of various cancer types. Despite this, its biological significance within pan-cancer datasets has yet to be investigated. In this investigation, we scrutinized FPR3's expression profiles, genetic alterations, prognostic significance, immune-related characteristics, methylation status, tumor mutation burden (TMB), and microsatellite instability (MSI) across different types of cancer. We utilized TISCH's single-cell data to identify immune cells closely associated with FPR3. The predictive significance of FPR3 was evaluated independently in gliomas using data from TCGA and CGGA datasets, leading to the development of a prognostic nomogram. Immunohistochemistry and Western blot analysis confirmed FPR3 expression in gliomas. Lastly, the CCK-8 and wound-healing assays were employed to assess the impact of FPR3 on the proliferation and metastasis of GBM cell lines. In numerous cancer types, heightened FPR3 expression correlated with adverse outcomes, immune cell infiltration, immune checkpoints, TMB, and MSI. In glioma, FPR3 emerged as a notable risk factor, with the prognostic model effectively forecasting patient results. The potential biological relevance of FPR3 was confirmed in glioma, and it was shown to have significant involvement in the processes of glioma growth, immune infiltration, and metastasis. Our results imply a potential association of FPR3 with tumor immunity, indicating its viability as a prognostic indicator in glioma.

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来源期刊
Frontiers in Genetics
Frontiers in Genetics Biochemistry, Genetics and Molecular Biology-Molecular Medicine
CiteScore
5.50
自引率
8.10%
发文量
3491
审稿时长
14 weeks
期刊介绍: Frontiers in Genetics publishes rigorously peer-reviewed research on genes and genomes relating to all the domains of life, from humans to plants to livestock and other model organisms. Led by an outstanding Editorial Board of the world’s leading experts, this multidisciplinary, open-access journal is at the forefront of communicating cutting-edge research to researchers, academics, clinicians, policy makers and the public. The study of inheritance and the impact of the genome on various biological processes is well documented. However, the majority of discoveries are still to come. A new era is seeing major developments in the function and variability of the genome, the use of genetic and genomic tools and the analysis of the genetic basis of various biological phenomena.
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