组蛋白 H4 尾部组合的乙酰化依赖性整合

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL
The Journal of Physical Chemistry B Pub Date : 2024-10-31 Epub Date: 2024-10-22 DOI:10.1021/acs.jpcb.4c05701
Sophia M Dewing, Tien M Phan, Emma J Kraft, Jeetain Mittal, Scott A Showalter
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引用次数: 0

摘要

组蛋白 H4 尾部(H4Kac)的乙酰化已被确定为染色质结构和可及性的重要调节因子;然而,这些观察结果的分子机制仍然难以捉摸。在这里,我们描述了组蛋白 H4 尾部的集合特征,并确定了它们在特定赖氨酸残基乙酰化后的变化情况。我们通过实验和计算生物物理方法的有力结合,对包括构象尺寸、分子内接触和二级结构倾向在内的分子细节进行了全面阐述。我们发现,乙酰化会显著改变基本补丁残基(16-20)的化学环境,并导致尾部压实,这种压实部分是由基本补丁和 N 端氨基酸之间建立的瞬时分子内接触介导的。除了乙酰化之外,我们还发现 H18 的质子化状态(受乙酰化状态的影响)是集合特征的一个关键调节因子,这凸显了序列上下文和翻译后修饰之间相互作用的潜力,从而确定了内在无序区域的集合特征。这项研究阐明了可能将 H4Kac 与染色质结构调控联系起来的分子细节,揭示了组蛋白密码假说所蕴含的复杂分子机制网络中的一小部分。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Acetylation-Dependent Compaction of the Histone H4 Tail Ensemble.

Acetylation of the histone H4 tail (H4Kac) has been established as a significant regulator of chromatin architecture and accessibility; however, the molecular mechanisms that underlie these observations remain elusive. Here, we characterize the ensemble features of the histone H4 tail and determine how they change following acetylation on specific sets of lysine residues. Our comprehensive account is enabled by a robust combination of experimental and computational biophysical methods that converge on molecular details including conformer size, intramolecular contacts, and secondary structure propensity. We find that acetylation significantly alters the chemical environment of basic patch residues (16-20) and leads to tail compaction that is partially mediated by transient intramolecular contacts established between the basic patch and N-terminal amino acids. Beyond acetylation, we identify that the protonation state of H18, which is affected by the acetylation state, is a critical regulator of ensemble characteristics, highlighting the potential for interplay between the sequence context and post-translational modifications to define the ensemble features of intrinsically disordered regions. This study elucidates molecular details that could link H4Kac with the regulation of chromatin architecture, illuminating a small piece of the complex network of molecular mechanisms underlying the histone code hypothesis.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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