高入侵性梧桐花边蝽的全球入侵历史和适应性基因组特征

Zhenyong Du, Xuan Wang, Yuange Duan, Shanlin Liu, Li Tian, Fan Song, Wanzhi Cai, Hu Li
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摘要

入侵物种造成了巨大的经济和生态破坏。气候变化导致入侵物种的数量和影响空前增加;然而,这些入侵的内在机制尚不清楚。梧桐花边蝽(Corythucha ciliata)是一种源自北美洲的高度入侵物种,自 20 世纪 60 年代以来已扩展到整个北半球。在这项研究中,我们利用高覆盖率的太平洋生物科学公司(PacBio)、Illumina 和高通量染色体构象捕获(Hi-C)测序技术组装了 C. ciliata 基因组。共鉴定出 15 278 个蛋白质编码基因,并观察到具有氧化还原酶和代谢活性的基因家族有所扩大。对来自三大洲本土和九个被入侵国家的 402 份样本进行的深度重测序发现了 274 万个单核苷酸多态性。确定了纤毛虫从北美到欧洲和日本的两条主要入侵路线,并在东亚形成了一个接触区。确定了与入侵相关的选择基因组特征以及在原生地的长期平衡选择特征。这些基因组特征与扩展基因重叠,表明纤毛虫的氧化应激和热耐受性有所提高。这些发现为了解物种在快速环境变化中的入侵能力所依赖的基因组结构和适应性进化提供了宝贵的见解。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Global Invasion History and Genomic Signatures of Adaptation of the Highly Invasive Sycamore Lace Bug.

Invasive species cause massive economic and ecological damage. Climate change has resulted in an unprecedented increase in the number and impact of invasive species; however, the mechanisms underlying these invasions are unclear. The sycamore lace bug, Corythucha ciliata, is a highly invasive species originating from North America and has expanded across the Northern Hemisphere since the 1960s. In this study, we assembled the C. ciliata genome using high-coverage Pacific Biosciences (PacBio), Illumina, and high-throughput chromosome conformation capture (Hi-C) sequencing. A total of 15,278 protein-coding genes were identified, and expansions of gene families with oxidoreductase and metabolic activities were observed. In-depth resequencing of 402 samples from native and nine invaded countries across three continents revealed 2.74 million single nucleotide polymorphisms. Two major invasion routes of C. ciliata were identified from North America to Europe and Japan, with a contact zone forming in East Asia. Genomic signatures of selection associated with invasion and long-term balancing selection in native ranges were identified. These genomic signatures overlapped with expanded genes, suggesting improvements in the oxidative stress and thermal tolerance of C. ciliata. These findings offer valuable insights into the genomic architecture and adaptive evolution underlying the invasive capabilities of species during rapid environmental changes.

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