晶体结构预测的第七次盲测:结构生成方法。

IF 1.3 3区 化学 Q3 CHEMISTRY, MULTIDISCIPLINARY
Lily M Hunnisett, Jonas Nyman, Nicholas Francia, Nathan S Abraham, Claire S Adjiman, Srinivasulu Aitipamula, Tamador Alkhidir, Mubarak Almehairbi, Andrea Anelli, Dylan M Anstine, John E Anthony, Joseph E Arnold, Faezeh Bahrami, Michael A Bellucci, Rajni M Bhardwaj, Imanuel Bier, Joanna A Bis, A Daniel Boese, David H Bowskill, James Bramley, Jan Gerit Brandenburg, Doris E Braun, Patrick W V Butler, Joseph Cadden, Stephen Carino, Eric J Chan, Chao Chang, Bingqing Cheng, Sarah M Clarke, Simon J Coles, Richard I Cooper, Ricky Couch, Ramon Cuadrado, Tom Darden, Graeme M Day, Hanno Dietrich, Yiming Ding, Antonio DiPasquale, Bhausaheb Dhokale, Bouke P van Eijck, Mark R J Elsegood, Dzmitry Firaha, Wenbo Fu, Kaori Fukuzawa, Joseph Glover, Hitoshi Goto, Chandler Greenwell, Rui Guo, Jürgen Harter, Julian Helfferich, Detlef W M Hofmann, Johannes Hoja, John Hone, Richard Hong, Geoffrey Hutchison, Yasuhiro Ikabata, Olexandr Isayev, Ommair Ishaque, Varsha Jain, Yingdi Jin, Aling Jing, Erin R Johnson, Ian Jones, K V Jovan Jose, Elena A Kabova, Adam Keates, Paul F Kelly, Dmitry Khakimov, Stefanos Konstantinopoulos, Liudmila N Kuleshova, He Li, Xiaolu Lin, Alexander List, Congcong Liu, Yifei Michelle Liu, Zenghui Liu, Zhi Pan Liu, Joseph W Lubach, Noa Marom, Alexander A Maryewski, Hiroyuki Matsui, Alessandra Mattei, R Alex Mayo, John W Melkumov, Sharmarke Mohamed, Zahrasadat Momenzadeh Abardeh, Hari S Muddana, Naofumi Nakayama, Kamal Singh Nayal, Marcus A Neumann, Rahul Nikhar, Shigeaki Obata, Dana O'Connor, Artem R Oganov, Koji Okuwaki, Alberto Otero-de-la-Roza, Constantinos C Pantelides, Sean Parkin, Chris J Pickard, Luca Pilia, Tatyana Pivina, Rafał Podeszwa, Alastair J A Price, Louise S Price, Sarah L Price, Michael R Probert, Angeles Pulido, Gunjan Rajendra Ramteke, Atta Ur Rehman, Susan M Reutzel-Edens, Jutta Rogal, Marta J Ross, Adrian F Rumson, Ghazala Sadiq, Zeinab M Saeed, Alireza Salimi, Matteo Salvalaglio, Leticia Sanders de Almada, Kiran Sasikumar, Sivakumar Sekharan, Cheng Shang, Kenneth Shankland, Kotaro Shinohara, Baimei Shi, Xuekun Shi, A Geoffrey Skillman, Hongxing Song, Nina Strasser, Jacco van de Streek, Isaac J Sugden, Guangxu Sun, Krzysztof Szalewicz, Benjamin I Tan, Lu Tan, Frank Tarczynski, Christopher R Taylor, Alexandre Tkatchenko, Rithwik Tom, Mark E Tuckerman, Yohei Utsumi, Leslie Vogt-Maranto, Jake Weatherston, Luke J Wilkinson, Robert D Willacy, Lukasz Wojtas, Grahame R Woollam, Zhuocen Yang, Etsuo Yonemochi, Xin Yue, Qun Zeng, Yizu Zhang, Tian Zhou, Yunfei Zhou, Roman Zubatyuk, Jason C Cole
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引用次数: 0

摘要

剑桥晶体学数据中心(Crystallographic Data Centre)组织了第七次晶体结构预测盲测,对七个不同复杂程度的目标系统进行了预测:一个含硅和碘分子、一个铜配位复合物、一个近刚性分子、一个共晶体、一个多形态小型农用化学品、一个高柔性多形态候选药物和一个多形态吗啉盐。在这两部分中的第一部分中,重点介绍了结构生成方法,许多晶体结构预测(CSP)方法在小型但灵活的农用化学品化合物方面表现出色,成功地再现了实验观察到的晶体结构,而在复杂度较高的系统方面,成功的方法却寥寥无几。一项粉末 X 射线衍射(PXRD)辅助研究表明,使用 CSP 可以成功地从低质量的 PXRD 图样中确定晶体结构。此外,还探讨了如何利用 CSP 预测可能的共晶化学计量,展示了多种可能的方法。晶体学无序是整个测试的一个重要主题,它既是对分析的挑战,也是一项重大成就,两个小组首次盲目预测了无序的存在。此外,对预测晶体结构集的大规模比较也表明,一些方法得出的晶体结构集基本上包含相同的晶体结构。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
The seventh blind test of crystal structure prediction: structure generation methods.

A seventh blind test of crystal structure prediction was organized by the Cambridge Crystallographic Data Centre featuring seven target systems of varying complexity: a silicon and iodine-containing molecule, a copper coordination complex, a near-rigid molecule, a cocrystal, a polymorphic small agrochemical, a highly flexible polymorphic drug candidate, and a polymorphic morpholine salt. In this first of two parts focusing on structure generation methods, many crystal structure prediction (CSP) methods performed well for the small but flexible agrochemical compound, successfully reproducing the experimentally observed crystal structures, while few groups were successful for the systems of higher complexity. A powder X-ray diffraction (PXRD) assisted exercise demonstrated the use of CSP in successfully determining a crystal structure from a low-quality PXRD pattern. The use of CSP in the prediction of likely cocrystal stoichiometry was also explored, demonstrating multiple possible approaches. Crystallographic disorder emerged as an important theme throughout the test as both a challenge for analysis and a major achievement where two groups blindly predicted the existence of disorder for the first time. Additionally, large-scale comparisons of the sets of predicted crystal structures also showed that some methods yield sets that largely contain the same crystal structures.

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来源期刊
Acta crystallographica Section B, Structural science, crystal engineering and materials
Acta crystallographica Section B, Structural science, crystal engineering and materials CHEMISTRY, MULTIDISCIPLINARYCRYSTALLOGRAPH-CRYSTALLOGRAPHY
CiteScore
3.60
自引率
5.30%
发文量
0
期刊介绍: Acta Crystallographica Section B: Structural Science, Crystal Engineering and Materials publishes scientific articles related to the structural science of compounds and materials in the widest sense. Knowledge of the arrangements of atoms, including their temporal variations and dependencies on temperature and pressure, is often the key to understanding physical and chemical phenomena and is crucial for the design of new materials and supramolecular devices. Acta Crystallographica B is the forum for the publication of such contributions. Scientific developments based on experimental studies as well as those based on theoretical approaches, including crystal-structure prediction, structure-property relations and the use of databases of crystal structures, are published.
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