Ben Liu, HaoYang Wang, ChunLi Su, SiFan ShangGuan, YiSang Zhang, ShiHao Nie, Ruiming Wang, Piwu Li, Junqing Wang, Jing Su
{"title":"重新配置大肠杆菌电子传递链,提高反式-2-癸烯酸的产量。","authors":"Ben Liu, HaoYang Wang, ChunLi Su, SiFan ShangGuan, YiSang Zhang, ShiHao Nie, Ruiming Wang, Piwu Li, Junqing Wang, Jing Su","doi":"10.1021/acssynbio.4c00451","DOIUrl":null,"url":null,"abstract":"<p><p><i>trans</i>-2-Decenoic acid is a pivotal α,β-medium-chain unsaturated fatty acid that serves as an essential intermediary in the synthesis of 10-hydroxy-2-decenoic acid and various pharmaceutical compounds. Biosynthesis yield of <i>trans</i>-2-decenoic acid by decanoic acid has significantly improved in recent years; however, the oxidative stress of <i>Escherichia coli</i> at high fatty acid concentrations restricts the conversion rate. Here, we introduced a combination of rational design and metabolic rewiring of the <i>E. coli</i> electron transport chain (ETC) to improve <i>trans</i>-2-decenoic acid production. Overexpressing ubiquinone (UbQ) biosynthesis genes enhanced the expression of ETC complex III: UbQ to reduce reactive oxygen species (ROS) accumulation. Furthermore, applying rotenone to inhibit ETC complex I improved the electron transfer efficiency of complex II. The integration of Vitamin B<sub>5</sub> and B<sub>2</sub> into the fermentation process increased the activities of fatty acyl-CoA synthetase (<sup><i>Ma</i></sup><i>MACS</i>) and fatty acyl-CoA dehydrogenase (<sup><i>Pp</i></sup><i>fadE</i>). Finally, the constructed <i>E. coli</i> BL21(DE3)(Δ<i>fadBJR</i>/pCDFDuet-1-<sup><i>Pp</i></sup><i>fadE</i>-<sup><i>Ma</i></sup><i>MACS</i>/pRSFDuet-1-sumo-<sup><i>Ct</i></sup><i>ydiI</i>-<i>ubiI</i>) strain exhibited a 51.50% decrease in ROS and a 93.33% enhancement in <i>trans</i>-2-decenoic acid yield, reaching 1.45 g/L after 66 h, which is the highest yield reported for flask fermentation. This study reports the feasibility of rewiring the ETC regulation and energy metabolism to improve α,β-UCA biosynthesis efficiency.</p>","PeriodicalId":26,"journal":{"name":"ACS Synthetic Biology","volume":null,"pages":null},"PeriodicalIF":3.7000,"publicationDate":"2024-11-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Reconfiguring the <i>Escherichia coli</i> Electron Transport Chain to Enhance <i>trans</i>-2-Decenoic Acid Production.\",\"authors\":\"Ben Liu, HaoYang Wang, ChunLi Su, SiFan ShangGuan, YiSang Zhang, ShiHao Nie, Ruiming Wang, Piwu Li, Junqing Wang, Jing Su\",\"doi\":\"10.1021/acssynbio.4c00451\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p><i>trans</i>-2-Decenoic acid is a pivotal α,β-medium-chain unsaturated fatty acid that serves as an essential intermediary in the synthesis of 10-hydroxy-2-decenoic acid and various pharmaceutical compounds. Biosynthesis yield of <i>trans</i>-2-decenoic acid by decanoic acid has significantly improved in recent years; however, the oxidative stress of <i>Escherichia coli</i> at high fatty acid concentrations restricts the conversion rate. Here, we introduced a combination of rational design and metabolic rewiring of the <i>E. coli</i> electron transport chain (ETC) to improve <i>trans</i>-2-decenoic acid production. Overexpressing ubiquinone (UbQ) biosynthesis genes enhanced the expression of ETC complex III: UbQ to reduce reactive oxygen species (ROS) accumulation. Furthermore, applying rotenone to inhibit ETC complex I improved the electron transfer efficiency of complex II. The integration of Vitamin B<sub>5</sub> and B<sub>2</sub> into the fermentation process increased the activities of fatty acyl-CoA synthetase (<sup><i>Ma</i></sup><i>MACS</i>) and fatty acyl-CoA dehydrogenase (<sup><i>Pp</i></sup><i>fadE</i>). Finally, the constructed <i>E. coli</i> BL21(DE3)(Δ<i>fadBJR</i>/pCDFDuet-1-<sup><i>Pp</i></sup><i>fadE</i>-<sup><i>Ma</i></sup><i>MACS</i>/pRSFDuet-1-sumo-<sup><i>Ct</i></sup><i>ydiI</i>-<i>ubiI</i>) strain exhibited a 51.50% decrease in ROS and a 93.33% enhancement in <i>trans</i>-2-decenoic acid yield, reaching 1.45 g/L after 66 h, which is the highest yield reported for flask fermentation. This study reports the feasibility of rewiring the ETC regulation and energy metabolism to improve α,β-UCA biosynthesis efficiency.</p>\",\"PeriodicalId\":26,\"journal\":{\"name\":\"ACS Synthetic Biology\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":3.7000,\"publicationDate\":\"2024-11-15\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"ACS Synthetic Biology\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1021/acssynbio.4c00451\",\"RegionNum\":2,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"2024/10/17 0:00:00\",\"PubModel\":\"Epub\",\"JCR\":\"Q1\",\"JCRName\":\"BIOCHEMICAL RESEARCH METHODS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"ACS Synthetic Biology","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1021/acssynbio.4c00451","RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"2024/10/17 0:00:00","PubModel":"Epub","JCR":"Q1","JCRName":"BIOCHEMICAL RESEARCH METHODS","Score":null,"Total":0}
Reconfiguring the Escherichia coli Electron Transport Chain to Enhance trans-2-Decenoic Acid Production.
trans-2-Decenoic acid is a pivotal α,β-medium-chain unsaturated fatty acid that serves as an essential intermediary in the synthesis of 10-hydroxy-2-decenoic acid and various pharmaceutical compounds. Biosynthesis yield of trans-2-decenoic acid by decanoic acid has significantly improved in recent years; however, the oxidative stress of Escherichia coli at high fatty acid concentrations restricts the conversion rate. Here, we introduced a combination of rational design and metabolic rewiring of the E. coli electron transport chain (ETC) to improve trans-2-decenoic acid production. Overexpressing ubiquinone (UbQ) biosynthesis genes enhanced the expression of ETC complex III: UbQ to reduce reactive oxygen species (ROS) accumulation. Furthermore, applying rotenone to inhibit ETC complex I improved the electron transfer efficiency of complex II. The integration of Vitamin B5 and B2 into the fermentation process increased the activities of fatty acyl-CoA synthetase (MaMACS) and fatty acyl-CoA dehydrogenase (PpfadE). Finally, the constructed E. coli BL21(DE3)(ΔfadBJR/pCDFDuet-1-PpfadE-MaMACS/pRSFDuet-1-sumo-CtydiI-ubiI) strain exhibited a 51.50% decrease in ROS and a 93.33% enhancement in trans-2-decenoic acid yield, reaching 1.45 g/L after 66 h, which is the highest yield reported for flask fermentation. This study reports the feasibility of rewiring the ETC regulation and energy metabolism to improve α,β-UCA biosynthesis efficiency.
期刊介绍:
The journal is particularly interested in studies on the design and synthesis of new genetic circuits and gene products; computational methods in the design of systems; and integrative applied approaches to understanding disease and metabolism.
Topics may include, but are not limited to:
Design and optimization of genetic systems
Genetic circuit design and their principles for their organization into programs
Computational methods to aid the design of genetic systems
Experimental methods to quantify genetic parts, circuits, and metabolic fluxes
Genetic parts libraries: their creation, analysis, and ontological representation
Protein engineering including computational design
Metabolic engineering and cellular manufacturing, including biomass conversion
Natural product access, engineering, and production
Creative and innovative applications of cellular programming
Medical applications, tissue engineering, and the programming of therapeutic cells
Minimal cell design and construction
Genomics and genome replacement strategies
Viral engineering
Automated and robotic assembly platforms for synthetic biology
DNA synthesis methodologies
Metagenomics and synthetic metagenomic analysis
Bioinformatics applied to gene discovery, chemoinformatics, and pathway construction
Gene optimization
Methods for genome-scale measurements of transcription and metabolomics
Systems biology and methods to integrate multiple data sources
in vitro and cell-free synthetic biology and molecular programming
Nucleic acid engineering.