{"title":"引导每个导联的潜变量:多导联心电图自我监督学习的新方法","authors":"","doi":"10.1016/j.cmpb.2024.108452","DOIUrl":null,"url":null,"abstract":"<div><h3>Background and Objective:</h3><div>Electrocardiogram (ECG) is one of the most important diagnostic tools for cardiovascular diseases (CVDs). Recent studies show that deep learning models can be trained using labeled ECGs to achieve automatic detection of CVDs, assisting cardiologists in diagnosis. However, the deep learning models heavily rely on labels in training, while manual labeling is costly and time-consuming. This paper proposes a new self-supervised learning (SSL) method for multilead ECGs: bootstrap each lead’s latent (BELL) to reduce the reliance and boost model performance in various tasks, especially when training data are insufficient.</div></div><div><h3>Method:</h3><div>BELL is a variant of the well-known bootstrap your own latent (BYOL). The BELL aims to learn prior knowledge from unlabeled ECGs by pretraining, benefitting downstream tasks. It leverages the characteristics of multilead ECGs. First, BELL uses the multiple-branch skeleton, which is more effective in processing multilead ECGs. Moreover, it proposes intra-lead and inter-lead mean square error (MSE) to guide pretraining, and their fusion can result in better performances. Additionally, BELL inherits the main advantage of the BYOL: No negative pair is used in pretraining, making it more efficient.</div></div><div><h3>Results:</h3><div>In most cases, BELL surpasses previous works in the experiments. More importantly, the pretraining improves model performances by 0.69% <span><math><mo>∼</mo></math></span> 8.89% in downstream tasks when only 10% of training data are available. Furthermore, BELL shows excellent adaptability to uncurated ECG data from a real-world hospital. Only slight performance degradation occurs (<span><math><mo><</mo></math></span>1% in most cases) when using these data.</div></div><div><h3>Conclusion:</h3><div>The results suggest that the BELL can alleviate the reliance on manual ECG labels from cardiologists, a critical bottleneck of the current deep learning-based models. In this way, the BELL can also help deep learning extend its application on automatic ECG analysis, reducing the cardiologists’ burden in real-world diagnosis.</div></div>","PeriodicalId":10624,"journal":{"name":"Computer methods and programs in biomedicine","volume":null,"pages":null},"PeriodicalIF":4.9000,"publicationDate":"2024-10-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Bootstrap each lead’s latent: A novel method for self-supervised learning of multilead electrocardiograms\",\"authors\":\"\",\"doi\":\"10.1016/j.cmpb.2024.108452\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Background and Objective:</h3><div>Electrocardiogram (ECG) is one of the most important diagnostic tools for cardiovascular diseases (CVDs). Recent studies show that deep learning models can be trained using labeled ECGs to achieve automatic detection of CVDs, assisting cardiologists in diagnosis. However, the deep learning models heavily rely on labels in training, while manual labeling is costly and time-consuming. This paper proposes a new self-supervised learning (SSL) method for multilead ECGs: bootstrap each lead’s latent (BELL) to reduce the reliance and boost model performance in various tasks, especially when training data are insufficient.</div></div><div><h3>Method:</h3><div>BELL is a variant of the well-known bootstrap your own latent (BYOL). The BELL aims to learn prior knowledge from unlabeled ECGs by pretraining, benefitting downstream tasks. It leverages the characteristics of multilead ECGs. First, BELL uses the multiple-branch skeleton, which is more effective in processing multilead ECGs. Moreover, it proposes intra-lead and inter-lead mean square error (MSE) to guide pretraining, and their fusion can result in better performances. Additionally, BELL inherits the main advantage of the BYOL: No negative pair is used in pretraining, making it more efficient.</div></div><div><h3>Results:</h3><div>In most cases, BELL surpasses previous works in the experiments. More importantly, the pretraining improves model performances by 0.69% <span><math><mo>∼</mo></math></span> 8.89% in downstream tasks when only 10% of training data are available. Furthermore, BELL shows excellent adaptability to uncurated ECG data from a real-world hospital. Only slight performance degradation occurs (<span><math><mo><</mo></math></span>1% in most cases) when using these data.</div></div><div><h3>Conclusion:</h3><div>The results suggest that the BELL can alleviate the reliance on manual ECG labels from cardiologists, a critical bottleneck of the current deep learning-based models. In this way, the BELL can also help deep learning extend its application on automatic ECG analysis, reducing the cardiologists’ burden in real-world diagnosis.</div></div>\",\"PeriodicalId\":10624,\"journal\":{\"name\":\"Computer methods and programs in biomedicine\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":4.9000,\"publicationDate\":\"2024-10-09\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Computer methods and programs in biomedicine\",\"FirstCategoryId\":\"5\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S0169260724004450\",\"RegionNum\":2,\"RegionCategory\":\"医学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Computer methods and programs in biomedicine","FirstCategoryId":"5","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S0169260724004450","RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
Bootstrap each lead’s latent: A novel method for self-supervised learning of multilead electrocardiograms
Background and Objective:
Electrocardiogram (ECG) is one of the most important diagnostic tools for cardiovascular diseases (CVDs). Recent studies show that deep learning models can be trained using labeled ECGs to achieve automatic detection of CVDs, assisting cardiologists in diagnosis. However, the deep learning models heavily rely on labels in training, while manual labeling is costly and time-consuming. This paper proposes a new self-supervised learning (SSL) method for multilead ECGs: bootstrap each lead’s latent (BELL) to reduce the reliance and boost model performance in various tasks, especially when training data are insufficient.
Method:
BELL is a variant of the well-known bootstrap your own latent (BYOL). The BELL aims to learn prior knowledge from unlabeled ECGs by pretraining, benefitting downstream tasks. It leverages the characteristics of multilead ECGs. First, BELL uses the multiple-branch skeleton, which is more effective in processing multilead ECGs. Moreover, it proposes intra-lead and inter-lead mean square error (MSE) to guide pretraining, and their fusion can result in better performances. Additionally, BELL inherits the main advantage of the BYOL: No negative pair is used in pretraining, making it more efficient.
Results:
In most cases, BELL surpasses previous works in the experiments. More importantly, the pretraining improves model performances by 0.69% 8.89% in downstream tasks when only 10% of training data are available. Furthermore, BELL shows excellent adaptability to uncurated ECG data from a real-world hospital. Only slight performance degradation occurs (1% in most cases) when using these data.
Conclusion:
The results suggest that the BELL can alleviate the reliance on manual ECG labels from cardiologists, a critical bottleneck of the current deep learning-based models. In this way, the BELL can also help deep learning extend its application on automatic ECG analysis, reducing the cardiologists’ burden in real-world diagnosis.
期刊介绍:
To encourage the development of formal computing methods, and their application in biomedical research and medical practice, by illustration of fundamental principles in biomedical informatics research; to stimulate basic research into application software design; to report the state of research of biomedical information processing projects; to report new computer methodologies applied in biomedical areas; the eventual distribution of demonstrable software to avoid duplication of effort; to provide a forum for discussion and improvement of existing software; to optimize contact between national organizations and regional user groups by promoting an international exchange of information on formal methods, standards and software in biomedicine.
Computer Methods and Programs in Biomedicine covers computing methodology and software systems derived from computing science for implementation in all aspects of biomedical research and medical practice. It is designed to serve: biochemists; biologists; geneticists; immunologists; neuroscientists; pharmacologists; toxicologists; clinicians; epidemiologists; psychiatrists; psychologists; cardiologists; chemists; (radio)physicists; computer scientists; programmers and systems analysts; biomedical, clinical, electrical and other engineers; teachers of medical informatics and users of educational software.