细胞状态速度对静止-增殖命运决定的惯性效应

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Harish Venkatachalapathy, Cole Brzakala, Eric Batchelor, Samira M Azarin, Casim A Sarkar
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引用次数: 0

摘要

能量景观可以直观地描述群体的异质性和动态性。然而,目前还不清楚的是,假设由初始位置和噪声决定的单个细胞行为是否得到了忠实再现。我们以乳腺癌休眠中 p21-Cdk2 依赖性静止-增殖决定为试验平台,研究了单细胞在受到低氧(一种休眠诱导应激)扰动时的动态景观。通过将基于轨迹的能量景观生成与单细胞延时显微镜相结合,我们发现在缺氧条件下观察到的细胞命运异质性需要p21/Cdk2景观上初始位置和速度的组合,而不是单独的位置。这可能是由于额外的细胞状态信息,如速度中编码的表观遗传特征和/或其他物种,但在仅由 p21 和 Cdk2 水平决定的瞬时位置中缺失。在这里,速度依赖性表现为惯性:缺氧前细胞周期速度较高的细胞在缺氧条件下继续沿着细胞周期前进,抵制了细胞周期退出的景观变化。这种惯性效应可能会显著影响肿瘤和其他动态变化的微环境中的细胞命运轨迹,在这些环境中,细胞状态的转变受多种生化物质的协调影响。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Inertial effect of cell state velocity on the quiescence-proliferation fate decision.

Energy landscapes can provide intuitive depictions of population heterogeneity and dynamics. However, it is unclear whether individual cell behavior, hypothesized to be determined by initial position and noise, is faithfully recapitulated. Using the p21-/Cdk2-dependent quiescence-proliferation decision in breast cancer dormancy as a testbed, we examined single-cell dynamics on the landscape when perturbed by hypoxia, a dormancy-inducing stress. Combining trajectory-based energy landscape generation with single-cell time-lapse microscopy, we found that a combination of initial position and velocity on a p21/Cdk2 landscape, but not position alone, was required to explain the observed cell fate heterogeneity under hypoxia. This is likely due to additional cell state information such as epigenetic features and/or other species encoded in velocity but missing in instantaneous position determined by p21 and Cdk2 levels alone. Here, velocity dependence manifested as inertia: cells with higher cell cycle velocities prior to hypoxia continued progressing along the cell cycle under hypoxia, resisting the change in landscape towards cell cycle exit. Such inertial effects may markedly influence cell fate trajectories in tumors and other dynamically changing microenvironments where cell state transitions are governed by coordination across several biochemical species.

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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
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