利用癌症活检组织的光谱空间分析校准肿瘤生长和侵袭参数。

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Stefano Pasetto, Michael Montejo, Mohammad U Zahid, Marilin Rosa, Robert Gatenby, Pirmin Schlicke, Roberto Diaz, Heiko Enderling
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引用次数: 0

摘要

反应-扩散方程被广泛应用于癌症数学模型中。根据有限的临床数据校准模型参数,是利用反应扩散方程模拟对患者进行可靠预测的关键。在此,我们将重点放在用于临床癌症诊断的组织活检中的常规细胞级数据上。我们分析了用多重免疫荧光染色的活检组织的空间结构。我们得出了两点相关函数和相应的空间功率谱分布。我们表明,这种由数据推导出的功率谱分布可以拟合反应-扩散方程解的功率谱,进而识别特定患者的肿瘤生长率和侵袭率。通过这种方法,可以从常规的活检材料中测量出患者特异性的关键肿瘤动态特性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Calibrating tumor growth and invasion parameters with spectral spatial analysis of cancer biopsy tissues.

The reaction-diffusion equation is widely used in mathematical models of cancer. The calibration of model parameters based on limited clinical data is critical to using reaction-diffusion equation simulations for reliable predictions on a per-patient basis. Here, we focus on cell-level data as routinely available from tissue biopsies used for clinical cancer diagnosis. We analyze the spatial architecture in biopsy tissues stained with multiplex immunofluorescence. We derive a two-point correlation function and the corresponding spatial power spectral distribution. We show that this data-deduced power spectral distribution can fit the power spectrum of the solution of reaction-diffusion equations that can then identify patient-specific tumor growth and invasion rates. This approach allows the measurement of patient-specific critical tumor dynamical properties from routinely available biopsy material at a single snapshot in time.

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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
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