新型可持续吡啶离子液体的开发:从反应性研究到基于机理的活性预测。

IF 2.1 4区 化学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY
Bakhtiyor Borikhonov, Elyor Berdimurodov, Tursunali Kholikov, W. B. Wan Nik, Konstantin P. Katin, Muslum DEMİR, Frunza Sapaev, Sherzod Turaev, Nigora Jurakulova, Ilyos Eliboev
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引用次数: 0

摘要

背景:由于吡啶鎓离子液体(ILs)在农业和制药领域具有潜在的应用前景,本研究旨在开发可持续的吡啶鎓离子液体(ILs)。吡啶鎓离子液体以其低熔点、高热稳定性和适中的溶解特性而著称。我们合成了三种新型吡啶基 IL:1-(2-(异戊氧基)-2-氧代乙基)吡啶-1-鎓氯化物、1-(2-(己氧基)-2-氧代乙基)吡啶-1-鎓氯化物和 1-(2-(苄氧基)-2-氧代乙基)吡啶-1-鎓氯化物。这些化合物的生物活性通过植物生长促进、除草和杀虫实验进行了评估。结果表明,苄氧基衍生物能显著促进小麦和黄瓜的生长,而异戊氧基化合物则具有很强的除草作用。我们采用了包括 DFT 计算和分子对接在内的计算方法来了解其结构-活性关系(SARs)和作用机制:计算技术包括采用 B3LYP 函数和 6-311G** 基集的色散校正密度泛函理论(DFT)。为了考虑弥散相互作用,还加入了 Grimme 的 D3 修正。计算通过 GAMESS-US 软件进行。反应性的量子描述符,如电离势、电子亲和力、化学势和亲电指数,都是从 HOMO 和 LUMO 能量中推导出来的。通过 CB-Dock 服务器和 AutoDock Vina 软件进行了分子对接研究,以预测与癌症相关蛋白的结合亲和力。Petra/Osiris/Molinspiration (POM) 分析用于预测合成的 ILs 的药物相似性和其他药物特性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Development of new sustainable pyridinium ionic liquids: From reactivity studies to mechanism-based activity predictions

Context

This study addresses the development of sustainable pyridinium ionic liquids (ILs) because of their potential applications in agriculture and pharmaceuticals. Pyridinium-based ILs are known for their low melting points, high thermal stability, and moderate solvation properties. We synthesized three novel pyridinium-based ILs: 1-(2-(isopentyloxy)-2-oxoethyl)pyridin-1-ium chloride, 1-(2-(hexyloxy)-2-oxoethyl)pyridin-1-ium chloride, and 1-(2-(benzyloxy)-2-oxoethyl)pyridin-1-ium chloride. The biological activities of these compounds were evaluated through plant growth promotion, herbicidal, and insecticidal assays. Our results show that the benzyloxy derivative significantly enhances wheat and cucumber growth, whereas the isopentyloxy compound has potent herbicidal effects. Computational methods, including DFT calculations and molecular docking, were applied to understand the structure‒activity relationships (SARs) and mechanisms of action.

Methods

The computational techniques involved dispersion-corrected density functional theory (DFT) with the B3LYP functional and the 6-311G** basis set. Grimme’s D3 corrections were included to account for dispersion interactions. The calculations were performed via GAMESS-US software. Quantum descriptors of reactivity, such as ionization potential, electron affinity, chemical potential, and electrophilicity index, were derived from the HOMO and LUMO energies. Molecular docking studies were conducted via the CB-Dock server via AutoDock Vina software to predict binding affinities to cancer-related proteins. Petra/Osiris/Molinspiration (POM) analysis was used to predict the drug likeness and other pharmaceutical properties of the synthesized ILs.

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来源期刊
Journal of Molecular Modeling
Journal of Molecular Modeling 化学-化学综合
CiteScore
3.50
自引率
4.50%
发文量
362
审稿时长
2.9 months
期刊介绍: The Journal of Molecular Modeling focuses on "hardcore" modeling, publishing high-quality research and reports. Founded in 1995 as a purely electronic journal, it has adapted its format to include a full-color print edition, and adjusted its aims and scope fit the fast-changing field of molecular modeling, with a particular focus on three-dimensional modeling. Today, the journal covers all aspects of molecular modeling including life science modeling; materials modeling; new methods; and computational chemistry. Topics include computer-aided molecular design; rational drug design, de novo ligand design, receptor modeling and docking; cheminformatics, data analysis, visualization and mining; computational medicinal chemistry; homology modeling; simulation of peptides, DNA and other biopolymers; quantitative structure-activity relationships (QSAR) and ADME-modeling; modeling of biological reaction mechanisms; and combined experimental and computational studies in which calculations play a major role.
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