空间相互作用可调节肿瘤生长和免疫浸润。

IF 3.5 2区 生物学 Q1 MATHEMATICAL & COMPUTATIONAL BIOLOGY
Sadegh Marzban, Sonal Srivastava, Sharon Kartika, Rafael Bravo, Rachel Safriel, Aidan Zarski, Alexander R A Anderson, Christine H Chung, Antonio L Amelio, Jeffrey West
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引用次数: 0

摘要

利用现有技术不太可能直接观察到肿瘤与免疫之间的相互作用,但基于临床数据的计算模拟可以为验证假设提供洞察力。据推测,胶原蛋白模式的演变是一种免疫逃逸机制,但人们对免疫与胶原蛋白相互作用的确切性质还知之甚少。量化鳞状细胞癌胶原纤维排列的空间数据表明,晚期疾病与高度排列的纤维有关。我们的计算建模框架可区分两种假设:免疫细胞迁移(1)平行或(2)垂直于胶原纤维方向。建模再现了免疫-细胞外基质的相互作用,其中胶原蛋白模式提供免疫保护,导致疾病阶段与免疫覆盖之间出现反比关系。在这里,计算建模通过定义细胞-细胞相互作用核函数,考虑从局部(细胞尺度)到全局(肿瘤尺度)的空间相互作用谱,提供了重要的机理见解。短程相互作用核为肿瘤细胞在强阿利效应条件下的生存提供了一种机制,而非对称的肿瘤-免疫相互作用核则会导致不良的免疫反应。因此,肿瘤-免疫相互作用核的长度尺度推动了肿瘤的生长和浸润。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Spatial interactions modulate tumor growth and immune infiltration.

Direct observation of tumor-immune interactions is unlikely in tumors with currently available technology, but computational simulations based on clinical data can provide insight to test hypotheses. It is hypothesized that patterns of collagen evolve as a mechanism of immune escape, but the exact nature of immune-collagen interactions is poorly understood. Spatial data quantifying collagen fiber alignment in squamous cell carcinomas indicates that late-stage disease is associated with highly aligned fibers. Our computational modeling framework discriminates between two hypotheses: immune cell migration that moves (1) parallel or (2) perpendicular to collagen fiber orientation. The modeling recapitulates immune-extracellular matrix interactions where collagen patterns provide immune protection, leading to an emergent inverse relationship between disease stage and immune coverage. Here, computational modeling provides important mechanistic insights by defining a kernel cell-cell interaction function that considers a spectrum of local (cell-scale) to global (tumor-scale) spatial interactions. Short-range interaction kernels provide a mechanism for tumor cell survival under conditions with strong Allee effects, while asymmetric tumor-immune interaction kernels lead to poor immune response. Thus, the length scale of tumor-immune interaction kernels drives tumor growth and infiltration.

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来源期刊
NPJ Systems Biology and Applications
NPJ Systems Biology and Applications Mathematics-Applied Mathematics
CiteScore
5.80
自引率
0.00%
发文量
46
审稿时长
8 weeks
期刊介绍: npj Systems Biology and Applications is an online Open Access journal dedicated to publishing the premier research that takes a systems-oriented approach. The journal aims to provide a forum for the presentation of articles that help define this nascent field, as well as those that apply the advances to wider fields. We encourage studies that integrate, or aid the integration of, data, analyses and insight from molecules to organisms and broader systems. Important areas of interest include not only fundamental biological systems and drug discovery, but also applications to health, medical practice and implementation, big data, biotechnology, food science, human behaviour, broader biological systems and industrial applications of systems biology. We encourage all approaches, including network biology, application of control theory to biological systems, computational modelling and analysis, comprehensive and/or high-content measurements, theoretical, analytical and computational studies of system-level properties of biological systems and computational/software/data platforms enabling such studies.
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