基于迭代自适应曲线拟合的新型质谱峰值精确提取算法

IF 3.1 2区 化学 Q2 BIOCHEMICAL RESEARCH METHODS
Fulong Deng, Xingliang He, Hanlu Yue, Hongen Sun, Bin Wu, Zhongjun Zhao, Yixiang Duan
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引用次数: 0

摘要

在质谱分析中,从重叠区域识别峰值是必要的,但也是困难的。虽然已经开发了多种方法来识别这些峰,特别是连续小波变换,但其应用仍然有限,而且很难处理复杂的重叠峰。为了解决这些难题,本研究提出了一种基于迭代自适应曲线拟合的新型质谱峰提取算法。该算法充分利用了自适应曲线拟合的全局优化特性。利用窗口搜索法获得初始峰参数,自适应拟合峰与原始数据之间的残差表明拟合的有效性,并提供重叠峰的信息。利用这些信息,我们进行了迭代自适应拟合,不断更新重叠峰,直到残差满足完成标准。最终拟合成功提取了重叠区域内的所有峰值。我们通过模拟数据、公共数据集中的真实信号以及两台不同质谱仪的光谱对所提出的方法进行了评估。结果表明,该方法能更有效地提取重叠严重的峰和多个重叠峰,抗噪声干扰,并具有处理高动态范围峰的潜力。更重要的是,所提出的方法能准确识别不同质谱仪实际光谱中的重叠峰,这在很大程度上有助于定性和定量分析。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
A Novel Accurate Peak Extraction Algorithm of Mass Spectrometry Based on Iterative Adaptive Curve Fitting.

In the analysis of mass spectrometry, the peak identification from the overlapped region is necessary yet difficult. Although various methods have been developed to identify these peaks, especially the continuous wavelet transformation, their applications are still limited and it is hard to deal with the complex overlapped peaks. In this study, a novel peak extraction algorithm of mass spectrometry based on iterative adaptive curve fitting is proposed to address these challenges. It fully utilizes the global optimization characteristics of adaptive curve fitting. Initial peak parameters are obtained using a window searching method, and the residuals between the adaptive fitting peak and the original data indicate the fit's effectiveness and provide information about the peaks in overlap. Using this information, we performed iterative adaptive fitting, continuously updating the overlapped peaks until the residuals met the completion criteria. All of the peaks within the overlapped region can be successfully extracted by the final fitting. The proposed method is evaluated by the simulated data, the real signal from a public data set, and the spectra of two different mass spectrometry instruments. The results demonstrate that this method can more effectively extract peaks with severe overlap and multiple overlapped peaks, resist noise interference, and offer the potential to process peaks with a high dynamic range. More importantly, the proposed method accurately identifies overlapped peaks in the actual spectra from various mass spectrometry instruments, which helps the qualitative and quantitative analyses to a great extent.

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来源期刊
CiteScore
5.50
自引率
9.40%
发文量
257
审稿时长
1 months
期刊介绍: The Journal of the American Society for Mass Spectrometry presents research papers covering all aspects of mass spectrometry, incorporating coverage of fields of scientific inquiry in which mass spectrometry can play a role. Comprehensive in scope, the journal publishes papers on both fundamentals and applications of mass spectrometry. Fundamental subjects include instrumentation principles, design, and demonstration, structures and chemical properties of gas-phase ions, studies of thermodynamic properties, ion spectroscopy, chemical kinetics, mechanisms of ionization, theories of ion fragmentation, cluster ions, and potential energy surfaces. In addition to full papers, the journal offers Communications, Application Notes, and Accounts and Perspectives
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