太赫兹波辐射下尼古丁与乙酰胆碱结合蛋白的解离。

IF 2.9 2区 化学 Q3 CHEMISTRY, PHYSICAL
The Journal of Physical Chemistry B Pub Date : 2024-10-10 Epub Date: 2024-09-27 DOI:10.1021/acs.jpcb.4c03755
Chen Chen, Hao-Tian Hao, Meng-Qiu Li, Yu-Qiang Ma, Hong-Ming Ding
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引用次数: 0

摘要

尼古丁(NCT)与乙酰胆碱结合蛋白(AChBP)的结合在突触传递和神经递质调节中发挥着重要作用。然而,有效调节它们的结合或解离过程仍然是一个具有挑战性的问题。在本研究中,我们采用全原子分子动力学(MD)模拟系统研究了外部太赫兹(THz)波对 AChBP 与 NCT 之间结合动力学的影响。我们首先确定了在没有太赫兹波的情况下 AChBP-NCT 结合的关键残基(即 W143)和关键相互作用(即氢键和阳离子-π相互作用)。然后,我们在三种不同频率(即 13.02、21.44 和 42.55 THz)下研究了带电 NCT 与 AChBP 的结合和解离。重要的是,13.02 THz 频率下的主要振动模式可以驱动 NCT 上的五角环旋转。这导致 NCT 和 W143 之间的氢键被破坏,形成阳离子-π 相互作用的可能性降低,从而导致 NCT 从 AChBP 中解离。此外,我们还进一步研究了电场强度对解离动力学的影响,发现当电场强度超过临界值(∼0.60 V/nm)时,配体解离的概率会随着强度的增加而逐渐上升。总之,这项研究有助于更好地理解太赫兹波对蛋白质-配体相互作用的影响,也可能为尼古丁成瘾治疗和神经退行性疾病治疗策略的潜在应用提供一些启示。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Dissociation of Nicotine from Acetylcholine-Binding Protein under Terahertz Waves Radiation.

The binding of nicotine (NCT) to acetylcholine-binding protein (AChBP) plays an important role in synaptic transmission and neurotransmitter regulation. However, effectively regulating their binding or dissociation processes remains a challenging problem. In this study, we employed all-atom molecular dynamics (MD) simulations to systematically investigate the impact of external terahertz (THz) waves on the binding kinetics between AChBP and NCT. We first identified the key residues (i.e., W143) and the key interactions (i.e., hydrogen bonding and cation-π interaction) in AChBP-NCT binding without THz waves. We then investigated the binding and dissociation of charged NCT with AChBP at three different frequencies (i.e., 13.02, 21.44, 42.55 THz). Importantly, the predominant vibrational modes at 13.02 THz can drive the rotation of the pentagonal ring on NCT. This leads to the disruption of hydrogen bonds between NCT and W143 and a reduced likelihood of forming cation-π interactions, resulting in the dissociation of NCT from AChBP. Additionally, we further investigated the influence of electric field intensities on the dissociation kinetics and found that when the electric field intensity exceeds a critical value (∼0.60 V/nm), the probability of ligand dissociation gradually rises as the intensity increases. In general, this study contributes to a better understanding of the effects of THz waves on protein-ligand interactions, which might also shed some light on potential applications in nicotine addiction treatment and therapeutic strategies for neurodegenerative diseases.

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来源期刊
CiteScore
5.80
自引率
9.10%
发文量
965
审稿时长
1.6 months
期刊介绍: An essential criterion for acceptance of research articles in the journal is that they provide new physical insight. Please refer to the New Physical Insights virtual issue on what constitutes new physical insight. Manuscripts that are essentially reporting data or applications of data are, in general, not suitable for publication in JPC B.
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