酶动力学建模:生物催化的当前挑战和未来展望》。

IF 2.9 3区 生物学 Q3 BIOCHEMISTRY & MOLECULAR BIOLOGY
Biochemistry Biochemistry Pub Date : 2024-10-15 Epub Date: 2024-09-26 DOI:10.1021/acs.biochem.4c00501
Jürgen Pleiss
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引用次数: 0

摘要

生物催化正在成为一门数据科学。高通量实验产生了快速增长的生物催化数据流,这些数据是机理和新型数据驱动建模方法的原材料,可用于预测性设计改良生物催化剂和新型生物工艺。对酶反应系统的整体和分子理解将使我们能够识别和克服动力学瓶颈,并改变反应的热力学。对反应系统进行全面表征和建模是一项社区工作;因此,发布的方法和结果应具有可查找、可访问、可互操作和可重复使用(FAIR)的特点,具体做法包括开发标准化的数据交换格式、提供完整且可重复的实验记录、开发可持续软件和分析数据的合作平台,以及发布结果和原始数据的资源库。生物催化的 FAIR 化是开发高度自动化实验室基础设施的先决条件,可提高科学成果的可重复性,减少开发新型合成路线所需的时间和成本。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Modeling Enzyme Kinetics: Current Challenges and Future Perspectives for Biocatalysis.

Biocatalysis is becoming a data science. High-throughput experimentation generates a rapidly increasing stream of biocatalytic data, which is the raw material for mechanistic and novel data-driven modeling approaches for the predictive design of improved biocatalysts and novel bioprocesses. The holistic and molecular understanding of enzymatic reaction systems will enable us to identify and overcome kinetic bottlenecks and shift the thermodynamics of a reaction. The full characterization and modeling of reaction systems is a community effort; therefore, published methods and results should be findable, accessible, interoperable, and reusable (FAIR), which is achieved by developing standardized data exchange formats, by a complete and reproducible documentation of experimentation, by collaborative platforms for developing sustainable software and for analyzing data, and by repositories for publishing results together with raw data. The FAIRification of biocatalysis is a prerequisite to developing highly automated laboratory infrastructures that improve the reproducibility of scientific results and reduce the time and costs required to develop novel synthesis routes.

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来源期刊
Biochemistry Biochemistry
Biochemistry Biochemistry 生物-生化与分子生物学
CiteScore
5.50
自引率
3.40%
发文量
336
审稿时长
1-2 weeks
期刊介绍: Biochemistry provides an international forum for publishing exceptional, rigorous, high-impact research across all of biological chemistry. This broad scope includes studies on the chemical, physical, mechanistic, and/or structural basis of biological or cell function, and encompasses the fields of chemical biology, synthetic biology, disease biology, cell biology, nucleic acid biology, neuroscience, structural biology, and biophysics. In addition to traditional Research Articles, Biochemistry also publishes Communications, Viewpoints, and Perspectives, as well as From the Bench articles that report new methods of particular interest to the biological chemistry community.
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