从多种来源检索生物多样性数据:实现二级数据的标准化和可访问性。

IF 1 4区 环境科学与生态学 Q3 BIODIVERSITY CONSERVATION
Biodiversity Data Journal Pub Date : 2024-09-20 eCollection Date: 2024-01-01 DOI:10.3897/BDJ.12.e133775
Nubia Marques, Carla Danielle de Melo Soares, Daniel de Melo Casali, Erick Cristofore Guimarães, Fernanda Guimarães Fava, João Marcelo da Silva Abreu, Ligiane Martins Moras, Letícia Gomes da Silva, Raphael Matias, Rafael Leandro de Assis, Rafael Fraga, Sara Miranda Almeida, Vanessa Guimarães Lopes, Verônica Oliveira, Rafaela Missagia, Eduardo Costa Carvalho, Nikolas Jorge Carneiro, Ronnie Alves, Pedro Souza-Filho, Guilherme Oliveira, Margarida Miranda, Valéria da Cunha Tavares
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引用次数: 0

摘要

生物多样性数据,尤其是物种出现和丰度数据,是检验自然科学中经验假设所不可或缺的。然而,为研究计划建立的数据集往往不符合 FAIR(可查找、可访问、可互操作和可重复使用)原则,这就引发了有关数据质量、准确性和可用性的问题。21 世纪显然是数据科学和分析的新时代,汇集、标准化、过滤和共享来自多个来源的生物多样性数据变得越来越有必要。在本研究中,我们提出了一个框架,用于提炼二级生物多样性数据并使其符合 FAIR 标准,以便将其用于宏观生态建模和其他研究。我们依靠达尔文核心基础模型对数据进行标准化,并进一步促进数据的整理和验证,包括与亚马逊河最东端接壤的生态区域中河口生态系统的多种分类群的出现和丰度。我们进一步讨论了提供标准化公共数据存储库对于推动科学进步的重要意义,并强调了其在促进生物多样性管理和保护方面的作用。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Retrieving biodiversity data from multiple sources: making secondary data standardised and accessible.

Biodiversity data, particularly species occurrence and abundance, are indispensable for testing empirical hypothesis in natural sciences. However, datasets built for research programmes do not often meet FAIR (findable, accessible, interoperable and reusable) principles, which raises questions about data quality, accuracy and availability. The 21st century has markedly been a new era for data science and analytics and every effort to aggregate, standardise, filter and share biodiversity data from multiple sources have become increasingly necessary. In this study, we propose a framework for refining and conforming secondary biodiversity data to FAIR standards to make them available for use such as macroecological modelling and other studies. We relied on a Darwin Core base model to standardise and further facilitate the curation and validation of data related including the occurrence and abundance of multiple taxa of a region that encompasses estuarine ecosystems in an ecotonal area bordering the easternmost Amazonia. We further discuss the significance of feeding standardised public data repositories to advance scientific progress and highlight their role in contributing to the biodiversity management and conservation.

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来源期刊
Biodiversity Data Journal
Biodiversity Data Journal Agricultural and Biological Sciences-Ecology, Evolution, Behavior and Systematics
CiteScore
2.20
自引率
7.70%
发文量
283
审稿时长
6 weeks
期刊介绍: Biodiversity Data Journal (BDJ) is a community peer-reviewed, open-access, comprehensive online platform, designed to accelerate publishing, dissemination and sharing of biodiversity-related data of any kind. All structural elements of the articles – text, morphological descriptions, occurrences, data tables, etc. – will be treated and stored as DATA, in accordance with the Data Publishing Policies and Guidelines of Pensoft Publishers. The journal will publish papers in biodiversity science containing taxonomic, floristic/faunistic, morphological, genomic, phylogenetic, ecological or environmental data on any taxon of any geological age from any part of the world with no lower or upper limit to manuscript size.
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