利用无基质动态核偏振的灵敏度增强型 1H-2H CPMAS NMR 研究生物分子动力学

IF 2.624
Thomas Biedenbänder , Aryana Rodgers , Mirjam Schröder , Liliya Vugmeyster , Björn Corzilius
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引用次数: 0

摘要

功能基团的分子动力学包含有关生物分子结构特性和功能活动的宝贵信息。核磁共振光谱是一种灵敏的工具,可用于研究各种时间尺度的分子动力学,从而加深对相关生物大分子的了解。在此,我们介绍一种利用 DNP 增强 2H NMR 研究淀粉样 beta (Aβ) 纤维等不溶性蛋白质中选择性氚化甲基的动力学的方法。我们采用了无基质 DNP 方法,并通过改变极化剂的添加量和模型蛋白质的复水水平对该方法进行了优化。我们的研究表明,在 1H-2H 交叉偏振 (CP) MAS 图谱中获得的 DNP 增强可将选择性氚化 Aβ 纤维样品的灵敏度提高一个数量级以上,从而将 100 至 150 K DNP 可及温度范围内的自旋晶格弛豫数据的收集速度提高 400 倍。然而,在描述从快速交换体系向慢速交换体系过渡的凝聚温度以下,由于极化剂的存在,实验获得的弛豫时间常数受到顺磁弛豫增强效应的影响。这似乎是生物大分子的一种普遍效应,因为它在另外两个蛋白质模型系统中也得到了证实。我们的演示为将 2H NMR 的动态测量范围扩展到目前可获得的有效浓度和/或温度以下提供了可能;然而,观察到的顺磁弛豫与分子动力学之间的相互作用也强调了更好地理解 DNP 增强 NMR 中弛豫效应的必要性。
本文章由计算机程序翻译,如有差异,请以英文原文为准。

Investigation of biomolecular dynamics by sensitivity-enhanced 1H–2H CPMAS NMR using matrix-free dynamic nuclear polarization

Investigation of biomolecular dynamics by sensitivity-enhanced 1H–2H CPMAS NMR using matrix-free dynamic nuclear polarization
Molecular dynamics of functional groups contain valuable information about structural properties and functional activities in biomolecules. NMR spectroscopy is a sensitive tool for the investigation of molecular dynamics over a wide range of timescales and thus may deepen the understanding of the biomolecules of interest. Here, we present an approach to use DNP-enhanced 2H NMR to study dynamics of selectively deuterated methyl groups in insoluble proteins such as amyloid beta (Aβ) fibrils. We adopted and optimized the matrix-free DNP approach by varying the amount of added polarizing agent as well as the rehydration level of model proteins. We show that the DNP enhancement obtained in 1H–2H cross-polarization (CP) MAS spectra may increase the sensitivity for selectively deuterated Aβ fibril samples by more than one order of magnitude, accelerating the collection of spin-lattice relaxation data in the DNP-accessible temperature range between 100 and 150 K by up to 400-fold. However, below the coalescence temperature, which describes the transition from the fast to the slow exchange regime, the experimentally obtained relaxation time constants suffer from a paramagnetic relaxation enhancement effect due to the presence of the polarizing agent. This seems to be a general effect for biomolecules as it is also confirmed for two other protein model systems. Our demonstration opens the possibility to extend the scope of 2H NMR for dynamics measurements to effective concentrations and/or temperatures below what is currently accessible; however, the observed interplay between paramagnetic relaxation and molecular dynamics also emphasizes the necessity for a better understanding of relaxation effects in DNP-enhanced NMR.
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CiteScore
1.90
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