Clara Bender, Abhimanyu Ghosh, Hamed Vakili, Preetam Ghosh, Avik W Ghosh
{"title":"用于流行病传播和不确定性预测的有效漂移-扩散模型。","authors":"Clara Bender, Abhimanyu Ghosh, Hamed Vakili, Preetam Ghosh, Avik W Ghosh","doi":"10.1016/j.bpr.2024.100182","DOIUrl":null,"url":null,"abstract":"<p><p>Predicting pandemic evolution involves complex modeling challenges, typically involving detailed discrete mathematics executed on large volumes of epidemiological data. Making them physics based provides added intuition as well as predictive value. Differential equations have the advantage of offering smooth, well-behaved solutions that try to capture overall predictive trends and averages. In this paper, the canonical susceptible-infected-recovered model is simplified, in the process generating quasi-analytical solutions and fitting functions that agree well with the numerics, as well as infection data across multiple countries. The equations provide an elegant way to visualize the evolution of the pandemic spread, by drawing equivalents with the similar dynamics of a particle, whose location over time represents the growing fraction of the population that is infected. This particle slides down a potential whose shape is set by model epidemiological parameters such as reproduction rate. Potential sources of errors and their growth over time are identified, and the uncertainties are mapped into a diffusive jitter that tends to push the particle away from its minimum. The combined physical understanding and analytical expressions offered by such an intuitive drift-diffusion model sets the foundation for their eventual extension to a multi-patch model while offering practical error bounds and could thus be useful in making policy decisions going forward.</p>","PeriodicalId":72402,"journal":{"name":"Biophysical reports","volume":null,"pages":null},"PeriodicalIF":2.4000,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"An effective drift-diffusion model for pandemic propagation and uncertainty prediction.\",\"authors\":\"Clara Bender, Abhimanyu Ghosh, Hamed Vakili, Preetam Ghosh, Avik W Ghosh\",\"doi\":\"10.1016/j.bpr.2024.100182\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><p>Predicting pandemic evolution involves complex modeling challenges, typically involving detailed discrete mathematics executed on large volumes of epidemiological data. Making them physics based provides added intuition as well as predictive value. Differential equations have the advantage of offering smooth, well-behaved solutions that try to capture overall predictive trends and averages. In this paper, the canonical susceptible-infected-recovered model is simplified, in the process generating quasi-analytical solutions and fitting functions that agree well with the numerics, as well as infection data across multiple countries. The equations provide an elegant way to visualize the evolution of the pandemic spread, by drawing equivalents with the similar dynamics of a particle, whose location over time represents the growing fraction of the population that is infected. This particle slides down a potential whose shape is set by model epidemiological parameters such as reproduction rate. Potential sources of errors and their growth over time are identified, and the uncertainties are mapped into a diffusive jitter that tends to push the particle away from its minimum. The combined physical understanding and analytical expressions offered by such an intuitive drift-diffusion model sets the foundation for their eventual extension to a multi-patch model while offering practical error bounds and could thus be useful in making policy decisions going forward.</p>\",\"PeriodicalId\":72402,\"journal\":{\"name\":\"Biophysical reports\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":2.4000,\"publicationDate\":\"2024-09-11\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Biophysical reports\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/10.1016/j.bpr.2024.100182\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"BIOPHYSICS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Biophysical reports","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/10.1016/j.bpr.2024.100182","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"BIOPHYSICS","Score":null,"Total":0}
引用次数: 0
摘要
预测大流行病的演变涉及复杂的建模挑战,通常涉及在大量流行病学数据上执行详细的离散数学。以物理学为基础的数学模型可以增加直观性和预测价值。微分方程的优势在于能提供平滑、良好的解法,试图捕捉整体预测趋势和平均值。本文对典型的易感-感染-恢复(SIR)模型进行了简化,在此过程中产生了准解析解和拟合函数,与数值以及多个国家的感染数据非常吻合。这些方程通过映射在 SIR 配置空间中移动的过阻尼经典粒子的动力学,提供了一种可视化演化的优雅方法,该粒子沿着电势的梯度漂移,电势的形状由模型和手头的参数设定。潜在的误差源及其随时间的增长被识别出来,不确定性被映射为一种扩散抖动,这种抖动往往会将粒子推离其最小值。这种直观的漂移-扩散模型所提供的综合物理理解和分析表达式为其最终扩展到多斑块模型奠定了基础,同时提供了实用的误差范围,因此可用于未来的政策决策。
An effective drift-diffusion model for pandemic propagation and uncertainty prediction.
Predicting pandemic evolution involves complex modeling challenges, typically involving detailed discrete mathematics executed on large volumes of epidemiological data. Making them physics based provides added intuition as well as predictive value. Differential equations have the advantage of offering smooth, well-behaved solutions that try to capture overall predictive trends and averages. In this paper, the canonical susceptible-infected-recovered model is simplified, in the process generating quasi-analytical solutions and fitting functions that agree well with the numerics, as well as infection data across multiple countries. The equations provide an elegant way to visualize the evolution of the pandemic spread, by drawing equivalents with the similar dynamics of a particle, whose location over time represents the growing fraction of the population that is infected. This particle slides down a potential whose shape is set by model epidemiological parameters such as reproduction rate. Potential sources of errors and their growth over time are identified, and the uncertainties are mapped into a diffusive jitter that tends to push the particle away from its minimum. The combined physical understanding and analytical expressions offered by such an intuitive drift-diffusion model sets the foundation for their eventual extension to a multi-patch model while offering practical error bounds and could thus be useful in making policy decisions going forward.