DIG-Mol:用于分子特性预测的对比双交互图神经网络

IF 6.7 2区 医学 Q1 COMPUTER SCIENCE, INFORMATION SYSTEMS
Zexing Zhao, Guangsi Shi, Xiaopeng Wu, Ruohua Ren, Xiaojun Gao, Fuyi Li
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引用次数: 0

摘要

分子特性预测是人工智能驱动的药物发现和分子特征学习的关键组成部分。尽管最近取得了一些进展,但现有方法仍然面临着一些挑战,例如泛化能力有限,以及从无标记数据中学习的表征不足,特别是对于分子结构特定的任务。为了解决这些局限性,我们引入了 DIG-Mol,一种用于分子特性预测的新型自监督图神经网络框架。该架构利用了对比学习的力量、双重交互机制和独特的分子图增强策略。DIG-Mol 将动量蒸馏网络与两个相互连接的网络整合在一起,从而有效地改进了分子特性分析。该框架能够提取分子结构和高阶语义的关键信息,并将对比度损失降至最低。通过在各种分子特性预测任务中进行广泛的实验评估,我们确立了 DIG-Mol 的一流性能。除了在少数学习场景中展示出卓越的可移植性之外,我们的可视化成果还突出显示了 DIG-Mol 更强的可解释性和表征能力。这些发现证实了我们的方法在克服传统方法所面临的挑战方面的有效性,标志着我们在分子性质预测方面取得了重大进展。该项目的代码现在可以在 https://github.com/ZeXingZ/DIG-Mol 上获得。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
DIG-Mol: A Contrastive Dual-Interaction Graph Neural Network for Molecular Property Prediction.

Molecular property prediction is a key component of AI-driven drug discovery and molecular characterization learning. Despite recent advances, existing methods still face challenges such as limited ability to generalize, and inadequate representation of learning from unlabeled data, especially for tasks specific to molecular structures. To address these limitations, we introduce DIG-Mol, a novel self-supervised graph neural network framework for molecular property prediction. This architecture leverages the power of contrast learning with dual interaction mechanisms and unique molecular graph enhancement strategies. DIG-Mol integrates a momentum distillation network with two interconnected networks to efficiently improve molecular characterization. The framework's ability to extract key information about molecular structure and higher-order semantics is supported by minimizing loss of contrast. We have established DIG-Mol's state-of-the-art performance through extensive experimental evaluation in a variety of molecular property prediction tasks. In addition to demonstrating superior transferability in a small number of learning scenarios, our visualizations highlight DIG-Mol's enhanced interpretability and representation capabilities. These findings confirm the effectiveness of our approach in overcoming challenges faced by traditional methods and mark a significant advance in molecular property prediction. The code for this project is now available at https://github.com/ZeXingZ/DIG-Mol.

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来源期刊
IEEE Journal of Biomedical and Health Informatics
IEEE Journal of Biomedical and Health Informatics COMPUTER SCIENCE, INFORMATION SYSTEMS-COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS
CiteScore
13.60
自引率
6.50%
发文量
1151
期刊介绍: IEEE Journal of Biomedical and Health Informatics publishes original papers presenting recent advances where information and communication technologies intersect with health, healthcare, life sciences, and biomedicine. Topics include acquisition, transmission, storage, retrieval, management, and analysis of biomedical and health information. The journal covers applications of information technologies in healthcare, patient monitoring, preventive care, early disease diagnosis, therapy discovery, and personalized treatment protocols. It explores electronic medical and health records, clinical information systems, decision support systems, medical and biological imaging informatics, wearable systems, body area/sensor networks, and more. Integration-related topics like interoperability, evidence-based medicine, and secure patient data are also addressed.
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