Ruilin He , Chen Li , Xinyi Yang , Jinzhu Yang , Tao Jiang , Marcin Grzegorzek , Hongzan Sun
{"title":"图曲率特征在胃癌组织病理图像识别计算机辅助诊断中的应用","authors":"Ruilin He , Chen Li , Xinyi Yang , Jinzhu Yang , Tao Jiang , Marcin Grzegorzek , Hongzan Sun","doi":"10.1016/j.imed.2024.02.001","DOIUrl":null,"url":null,"abstract":"<div><h3>Background</h3><p>Histopathology diagnosis is often regarded as the final diagnostic method for malignant tumors; however, it has some drawbacks. This study explored a computer-aided diagnostic method that can be used to identify benign and malignant gastric cancer using histopathological images.</p></div><div><h3>Methods</h3><p>The most suitable process was selected through multiple experiments by comparing multiple methods and features for classification. First, the U-net was applied to segment the image. Next, the nucleus was extracted from the segmented image, and the minimum spanning tree (MST) diagram structure that can capture the topological information was drawn. The third step was to extract the graph-curvature features of the histopathological image according to the MST image. Finally, by inputting the graph-curvature features into the classifier, the recognition results for benign or malignant cancer can be obtained.</p></div><div><h3>Results</h3><p>During the experiment, we used various methods for comparison. In the image segmentation stage, U-net, watershed algorithm, and Otsu threshold segmentation methods were used. We found that the U-net method, combined with multiple indicators, was the most suitable for segmentation of histopathological images. In the feature extraction stage, in addition to extracting graph-edge and graph-curvature features, several basic image features were extracted, including the red, green and blue feature, gray-level co-occurrence matrix feature, histogram of oriented gradient feature, and local binary pattern feature. In the classifier design stage, we experimented with various methods, such as support vector machine (SVM), random forest, artificial neural network, K nearest neighbors, VGG-16, and inception-V3. Through comparison and analysis, it was found that classification results with an accuracy of 98.57% can be obtained by inputting the graph-curvature feature into the SVM classifier.</p></div><div><h3>Conclusion</h3><p>This study created a unique feature, the graph-curvature feature, based on the MST to represent and analyze histopathological images. This graph-based feature could be used to identify benign and malignant cells in histopathological images and assist pathologists in diagnosis.</p></div>","PeriodicalId":73400,"journal":{"name":"Intelligent medicine","volume":"4 3","pages":"Pages 141-152"},"PeriodicalIF":4.4000,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.sciencedirect.com/science/article/pii/S2667102624000330/pdfft?md5=a0b55da17b64f6b28358122b207863f3&pid=1-s2.0-S2667102624000330-main.pdf","citationCount":"0","resultStr":"{\"title\":\"Application of graph-curvature features in computer-aided diagnosis for histopathological image identification of gastric cancer\",\"authors\":\"Ruilin He , Chen Li , Xinyi Yang , Jinzhu Yang , Tao Jiang , Marcin Grzegorzek , Hongzan Sun\",\"doi\":\"10.1016/j.imed.2024.02.001\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<div><h3>Background</h3><p>Histopathology diagnosis is often regarded as the final diagnostic method for malignant tumors; however, it has some drawbacks. This study explored a computer-aided diagnostic method that can be used to identify benign and malignant gastric cancer using histopathological images.</p></div><div><h3>Methods</h3><p>The most suitable process was selected through multiple experiments by comparing multiple methods and features for classification. First, the U-net was applied to segment the image. Next, the nucleus was extracted from the segmented image, and the minimum spanning tree (MST) diagram structure that can capture the topological information was drawn. The third step was to extract the graph-curvature features of the histopathological image according to the MST image. Finally, by inputting the graph-curvature features into the classifier, the recognition results for benign or malignant cancer can be obtained.</p></div><div><h3>Results</h3><p>During the experiment, we used various methods for comparison. In the image segmentation stage, U-net, watershed algorithm, and Otsu threshold segmentation methods were used. We found that the U-net method, combined with multiple indicators, was the most suitable for segmentation of histopathological images. In the feature extraction stage, in addition to extracting graph-edge and graph-curvature features, several basic image features were extracted, including the red, green and blue feature, gray-level co-occurrence matrix feature, histogram of oriented gradient feature, and local binary pattern feature. In the classifier design stage, we experimented with various methods, such as support vector machine (SVM), random forest, artificial neural network, K nearest neighbors, VGG-16, and inception-V3. Through comparison and analysis, it was found that classification results with an accuracy of 98.57% can be obtained by inputting the graph-curvature feature into the SVM classifier.</p></div><div><h3>Conclusion</h3><p>This study created a unique feature, the graph-curvature feature, based on the MST to represent and analyze histopathological images. This graph-based feature could be used to identify benign and malignant cells in histopathological images and assist pathologists in diagnosis.</p></div>\",\"PeriodicalId\":73400,\"journal\":{\"name\":\"Intelligent medicine\",\"volume\":\"4 3\",\"pages\":\"Pages 141-152\"},\"PeriodicalIF\":4.4000,\"publicationDate\":\"2024-08-01\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"https://www.sciencedirect.com/science/article/pii/S2667102624000330/pdfft?md5=a0b55da17b64f6b28358122b207863f3&pid=1-s2.0-S2667102624000330-main.pdf\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Intelligent medicine\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://www.sciencedirect.com/science/article/pii/S2667102624000330\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Intelligent medicine","FirstCategoryId":"1085","ListUrlMain":"https://www.sciencedirect.com/science/article/pii/S2667102624000330","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"COMPUTER SCIENCE, INTERDISCIPLINARY APPLICATIONS","Score":null,"Total":0}
Application of graph-curvature features in computer-aided diagnosis for histopathological image identification of gastric cancer
Background
Histopathology diagnosis is often regarded as the final diagnostic method for malignant tumors; however, it has some drawbacks. This study explored a computer-aided diagnostic method that can be used to identify benign and malignant gastric cancer using histopathological images.
Methods
The most suitable process was selected through multiple experiments by comparing multiple methods and features for classification. First, the U-net was applied to segment the image. Next, the nucleus was extracted from the segmented image, and the minimum spanning tree (MST) diagram structure that can capture the topological information was drawn. The third step was to extract the graph-curvature features of the histopathological image according to the MST image. Finally, by inputting the graph-curvature features into the classifier, the recognition results for benign or malignant cancer can be obtained.
Results
During the experiment, we used various methods for comparison. In the image segmentation stage, U-net, watershed algorithm, and Otsu threshold segmentation methods were used. We found that the U-net method, combined with multiple indicators, was the most suitable for segmentation of histopathological images. In the feature extraction stage, in addition to extracting graph-edge and graph-curvature features, several basic image features were extracted, including the red, green and blue feature, gray-level co-occurrence matrix feature, histogram of oriented gradient feature, and local binary pattern feature. In the classifier design stage, we experimented with various methods, such as support vector machine (SVM), random forest, artificial neural network, K nearest neighbors, VGG-16, and inception-V3. Through comparison and analysis, it was found that classification results with an accuracy of 98.57% can be obtained by inputting the graph-curvature feature into the SVM classifier.
Conclusion
This study created a unique feature, the graph-curvature feature, based on the MST to represent and analyze histopathological images. This graph-based feature could be used to identify benign and malignant cells in histopathological images and assist pathologists in diagnosis.