Michael C. Thompson, Mark J. Ducey, John S. Gunn, Rebecca J. Rowe
{"title":"用于评估鸟网识别准确性和群落构成的后处理框架","authors":"Michael C. Thompson, Mark J. Ducey, John S. Gunn, Rebecca J. Rowe","doi":"10.1111/ibi.13357","DOIUrl":null,"url":null,"abstract":"Passively collected acoustic data have become increasingly common in wildlife research and have prompted the development of machine‐learning approaches to extract and classify large sets of audio files. BirdNET is an open‐source automatic prediction model that is popular because of its lack of training requirements for end users. Several studies have sought to test the accuracy of BirdNET and illustrate its potential in occupancy modelling of single or multiple species. However, these techniques either require extensive statistical knowledge or computational power to be applied to large datasets. In addition, there is a lack of comparisons of occupancy and community composition calculated using BirdNET and typical field methods. Here we develop a framework for assessing the accuracy of BirdNET using generalized linear mixed models to determine species‐specific confidence score thresholds. We then compare community composition under our model and another post‐processing approach to field data collected from co‐located point count surveys in northeastern Vermont. Our framework outperformed the other post‐processing method and resulted in species composition similar to that of point count surveys. Our work highlights the potential mismatch between accuracy and confidence score and the importance of developing species‐specific thresholds. The framework can facilitate research on large acoustic datasets and can be applied to output from BirdNET or other automatic prediction models.","PeriodicalId":1,"journal":{"name":"Accounts of Chemical Research","volume":null,"pages":null},"PeriodicalIF":16.4000,"publicationDate":"2024-09-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"A post‐processing framework for assessing BirdNET identification accuracy and community composition\",\"authors\":\"Michael C. Thompson, Mark J. Ducey, John S. Gunn, Rebecca J. Rowe\",\"doi\":\"10.1111/ibi.13357\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Passively collected acoustic data have become increasingly common in wildlife research and have prompted the development of machine‐learning approaches to extract and classify large sets of audio files. BirdNET is an open‐source automatic prediction model that is popular because of its lack of training requirements for end users. Several studies have sought to test the accuracy of BirdNET and illustrate its potential in occupancy modelling of single or multiple species. However, these techniques either require extensive statistical knowledge or computational power to be applied to large datasets. In addition, there is a lack of comparisons of occupancy and community composition calculated using BirdNET and typical field methods. Here we develop a framework for assessing the accuracy of BirdNET using generalized linear mixed models to determine species‐specific confidence score thresholds. We then compare community composition under our model and another post‐processing approach to field data collected from co‐located point count surveys in northeastern Vermont. Our framework outperformed the other post‐processing method and resulted in species composition similar to that of point count surveys. Our work highlights the potential mismatch between accuracy and confidence score and the importance of developing species‐specific thresholds. The framework can facilitate research on large acoustic datasets and can be applied to output from BirdNET or other automatic prediction models.\",\"PeriodicalId\":1,\"journal\":{\"name\":\"Accounts of Chemical Research\",\"volume\":null,\"pages\":null},\"PeriodicalIF\":16.4000,\"publicationDate\":\"2024-09-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Accounts of Chemical Research\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1111/ibi.13357\",\"RegionNum\":1,\"RegionCategory\":\"化学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q1\",\"JCRName\":\"CHEMISTRY, MULTIDISCIPLINARY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Accounts of Chemical Research","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1111/ibi.13357","RegionNum":1,"RegionCategory":"化学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q1","JCRName":"CHEMISTRY, MULTIDISCIPLINARY","Score":null,"Total":0}
A post‐processing framework for assessing BirdNET identification accuracy and community composition
Passively collected acoustic data have become increasingly common in wildlife research and have prompted the development of machine‐learning approaches to extract and classify large sets of audio files. BirdNET is an open‐source automatic prediction model that is popular because of its lack of training requirements for end users. Several studies have sought to test the accuracy of BirdNET and illustrate its potential in occupancy modelling of single or multiple species. However, these techniques either require extensive statistical knowledge or computational power to be applied to large datasets. In addition, there is a lack of comparisons of occupancy and community composition calculated using BirdNET and typical field methods. Here we develop a framework for assessing the accuracy of BirdNET using generalized linear mixed models to determine species‐specific confidence score thresholds. We then compare community composition under our model and another post‐processing approach to field data collected from co‐located point count surveys in northeastern Vermont. Our framework outperformed the other post‐processing method and resulted in species composition similar to that of point count surveys. Our work highlights the potential mismatch between accuracy and confidence score and the importance of developing species‐specific thresholds. The framework can facilitate research on large acoustic datasets and can be applied to output from BirdNET or other automatic prediction models.
期刊介绍:
Accounts of Chemical Research presents short, concise and critical articles offering easy-to-read overviews of basic research and applications in all areas of chemistry and biochemistry. These short reviews focus on research from the author’s own laboratory and are designed to teach the reader about a research project. In addition, Accounts of Chemical Research publishes commentaries that give an informed opinion on a current research problem. Special Issues online are devoted to a single topic of unusual activity and significance.
Accounts of Chemical Research replaces the traditional article abstract with an article "Conspectus." These entries synopsize the research affording the reader a closer look at the content and significance of an article. Through this provision of a more detailed description of the article contents, the Conspectus enhances the article's discoverability by search engines and the exposure for the research.