Arshia Nazir, Maham Ijaz, Hafiz Muzzammel Rehman, Muhammad Sajjad
{"title":"刚性柔性位点:提高阿贝斯裂殖球菌溶血磷脂酶热稳定性的有效策略","authors":"Arshia Nazir, Maham Ijaz, Hafiz Muzzammel Rehman, Muhammad Sajjad","doi":"10.1002/prot.26748","DOIUrl":null,"url":null,"abstract":"High thermostability of the enzymes is one of the distinguishing characteristics that increase their industrial utility. In the current research work, rigidifying the flexible amino acid residues of a lysophospholipase (Pa‐LPL) from <jats:italic>Pyrococcus abyssi</jats:italic> was used as a protein engineering approach to improve its thermostability. A truncated variant of Pa‐LPL (t‐LPL∆12) was constructed by trimming its 12 amino acid residues (50–61) through overlap extension PCR. The truncated enzyme worked optimally at 65°C and pH 6.5 with remarkable thermostability at 65°C–85°C. In comparison to wild‐type Pa‐LPL, 5.8 and 1.2‐fold increase in half‐life (t<jats:sub>1/2</jats:sub>) of t‐LPL∆12 was observed at 65 (optimum temperature) and 95°C, respectively. The activity of t‐LPL∆12 was stimulated by 1 mM Cu<jats:sup>2+</jats:sup> followed by Ca<jats:sup>2+</jats:sup>, Ni<jats:sup>2+</jats:sup>, Co<jats:sup>2+</jats:sup>, and Mg<jats:sup>2+</jats:sup>. Both substrate docking and experimental results indicated that the truncated enzyme could hydrolyze a variety of <jats:italic>p</jats:italic>‐nitrophenyl esters. <jats:italic>K</jats:italic><jats:sub>m</jats:sub>, <jats:italic>V</jats:italic><jats:sub>max</jats:sub>, and <jats:italic>K</jats:italic><jats:sub>cat</jats:sub> for enzymatic hydrolysis of <jats:italic>p</jats:italic>‐nitrophenyl butyrate were calculated to be 1 ± 0.087 mM, 1456 ± 36.474 U/mg, and 1.397 × 10<jats:sup>11</jats:sup> min<jats:sup>−1</jats:sup>, respectively. In short, broad substrate specificity and thermostability of t‐LPL∆12 are some of the distinctive features that make it an ideal candidate for degumming of vegetable oils.","PeriodicalId":56271,"journal":{"name":"Proteins-Structure Function and Bioinformatics","volume":"17 1","pages":""},"PeriodicalIF":3.2000,"publicationDate":"2024-09-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Rigidifying Flexible Sites: A Promising Strategy to Improve Thermostability of Lysophospholipase From Pyrococcus abyssi\",\"authors\":\"Arshia Nazir, Maham Ijaz, Hafiz Muzzammel Rehman, Muhammad Sajjad\",\"doi\":\"10.1002/prot.26748\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"High thermostability of the enzymes is one of the distinguishing characteristics that increase their industrial utility. In the current research work, rigidifying the flexible amino acid residues of a lysophospholipase (Pa‐LPL) from <jats:italic>Pyrococcus abyssi</jats:italic> was used as a protein engineering approach to improve its thermostability. A truncated variant of Pa‐LPL (t‐LPL∆12) was constructed by trimming its 12 amino acid residues (50–61) through overlap extension PCR. The truncated enzyme worked optimally at 65°C and pH 6.5 with remarkable thermostability at 65°C–85°C. In comparison to wild‐type Pa‐LPL, 5.8 and 1.2‐fold increase in half‐life (t<jats:sub>1/2</jats:sub>) of t‐LPL∆12 was observed at 65 (optimum temperature) and 95°C, respectively. The activity of t‐LPL∆12 was stimulated by 1 mM Cu<jats:sup>2+</jats:sup> followed by Ca<jats:sup>2+</jats:sup>, Ni<jats:sup>2+</jats:sup>, Co<jats:sup>2+</jats:sup>, and Mg<jats:sup>2+</jats:sup>. Both substrate docking and experimental results indicated that the truncated enzyme could hydrolyze a variety of <jats:italic>p</jats:italic>‐nitrophenyl esters. <jats:italic>K</jats:italic><jats:sub>m</jats:sub>, <jats:italic>V</jats:italic><jats:sub>max</jats:sub>, and <jats:italic>K</jats:italic><jats:sub>cat</jats:sub> for enzymatic hydrolysis of <jats:italic>p</jats:italic>‐nitrophenyl butyrate were calculated to be 1 ± 0.087 mM, 1456 ± 36.474 U/mg, and 1.397 × 10<jats:sup>11</jats:sup> min<jats:sup>−1</jats:sup>, respectively. In short, broad substrate specificity and thermostability of t‐LPL∆12 are some of the distinctive features that make it an ideal candidate for degumming of vegetable oils.\",\"PeriodicalId\":56271,\"journal\":{\"name\":\"Proteins-Structure Function and Bioinformatics\",\"volume\":\"17 1\",\"pages\":\"\"},\"PeriodicalIF\":3.2000,\"publicationDate\":\"2024-09-18\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Proteins-Structure Function and Bioinformatics\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1002/prot.26748\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q2\",\"JCRName\":\"BIOCHEMISTRY & MOLECULAR BIOLOGY\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Proteins-Structure Function and Bioinformatics","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1002/prot.26748","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q2","JCRName":"BIOCHEMISTRY & MOLECULAR BIOLOGY","Score":null,"Total":0}
Rigidifying Flexible Sites: A Promising Strategy to Improve Thermostability of Lysophospholipase From Pyrococcus abyssi
High thermostability of the enzymes is one of the distinguishing characteristics that increase their industrial utility. In the current research work, rigidifying the flexible amino acid residues of a lysophospholipase (Pa‐LPL) from Pyrococcus abyssi was used as a protein engineering approach to improve its thermostability. A truncated variant of Pa‐LPL (t‐LPL∆12) was constructed by trimming its 12 amino acid residues (50–61) through overlap extension PCR. The truncated enzyme worked optimally at 65°C and pH 6.5 with remarkable thermostability at 65°C–85°C. In comparison to wild‐type Pa‐LPL, 5.8 and 1.2‐fold increase in half‐life (t1/2) of t‐LPL∆12 was observed at 65 (optimum temperature) and 95°C, respectively. The activity of t‐LPL∆12 was stimulated by 1 mM Cu2+ followed by Ca2+, Ni2+, Co2+, and Mg2+. Both substrate docking and experimental results indicated that the truncated enzyme could hydrolyze a variety of p‐nitrophenyl esters. Km, Vmax, and Kcat for enzymatic hydrolysis of p‐nitrophenyl butyrate were calculated to be 1 ± 0.087 mM, 1456 ± 36.474 U/mg, and 1.397 × 1011 min−1, respectively. In short, broad substrate specificity and thermostability of t‐LPL∆12 are some of the distinctive features that make it an ideal candidate for degumming of vegetable oils.
期刊介绍:
PROTEINS : Structure, Function, and Bioinformatics publishes original reports of significant experimental and analytic research in all areas of protein research: structure, function, computation, genetics, and design. The journal encourages reports that present new experimental or computational approaches for interpreting and understanding data from biophysical chemistry, structural studies of proteins and macromolecular assemblies, alterations of protein structure and function engineered through techniques of molecular biology and genetics, functional analyses under physiologic conditions, as well as the interactions of proteins with receptors, nucleic acids, or other specific ligands or substrates. Research in protein and peptide biochemistry directed toward synthesizing or characterizing molecules that simulate aspects of the activity of proteins, or that act as inhibitors of protein function, is also within the scope of PROTEINS. In addition to full-length reports, short communications (usually not more than 4 printed pages) and prediction reports are welcome. Reviews are typically by invitation; authors are encouraged to submit proposed topics for consideration.