{"title":"自我折叠 自我复制","authors":"Ralph P. Lano","doi":"arxiv-2408.07154","DOIUrl":null,"url":null,"abstract":"Inspired by protein folding, we explored the construction of\nthree-dimensional structures and machines from one-dimensional chains of simple\nbuilding blocks. This approach not only allows us to recreate the\nself-replication mechanism introduced earlier, but also significantly\nsimplifies the process. We introduced a new set of folding blocks that\nfacilitate the formation of secondary structures such as {\\alpha}-helices and\n\\b{eta}-sheets, as well as more advanced tertiary and quaternary structures,\nincluding self-replicating machines. The introduction of rotational degrees of\nfreedom leads to a reduced variety of blocks and, most importantly, reduces the\noverall size of the machines by a factor of five. In addition, we present a\nuniversal copier-constructor, a highly efficient self-replicating mechanism\ncomposed of approximately 40 blocks, including the restictions posed on it. The\npaper also addresses evolutionary considerations, outlining several steps on\nthe evolutionary ladder towards more sophisticated self-replicating systems.\nFinally, this study offers a clear rationale for nature's preference for\none-dimensional chains in constructing three-dimensional structures.","PeriodicalId":501040,"journal":{"name":"arXiv - PHYS - Biological Physics","volume":"59 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-08-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Self-folding Self-replication\",\"authors\":\"Ralph P. Lano\",\"doi\":\"arxiv-2408.07154\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Inspired by protein folding, we explored the construction of\\nthree-dimensional structures and machines from one-dimensional chains of simple\\nbuilding blocks. This approach not only allows us to recreate the\\nself-replication mechanism introduced earlier, but also significantly\\nsimplifies the process. We introduced a new set of folding blocks that\\nfacilitate the formation of secondary structures such as {\\\\alpha}-helices and\\n\\\\b{eta}-sheets, as well as more advanced tertiary and quaternary structures,\\nincluding self-replicating machines. The introduction of rotational degrees of\\nfreedom leads to a reduced variety of blocks and, most importantly, reduces the\\noverall size of the machines by a factor of five. In addition, we present a\\nuniversal copier-constructor, a highly efficient self-replicating mechanism\\ncomposed of approximately 40 blocks, including the restictions posed on it. The\\npaper also addresses evolutionary considerations, outlining several steps on\\nthe evolutionary ladder towards more sophisticated self-replicating systems.\\nFinally, this study offers a clear rationale for nature's preference for\\none-dimensional chains in constructing three-dimensional structures.\",\"PeriodicalId\":501040,\"journal\":{\"name\":\"arXiv - PHYS - Biological Physics\",\"volume\":\"59 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-08-13\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - PHYS - Biological Physics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2408.07154\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - PHYS - Biological Physics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2408.07154","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Inspired by protein folding, we explored the construction of
three-dimensional structures and machines from one-dimensional chains of simple
building blocks. This approach not only allows us to recreate the
self-replication mechanism introduced earlier, but also significantly
simplifies the process. We introduced a new set of folding blocks that
facilitate the formation of secondary structures such as {\alpha}-helices and
\b{eta}-sheets, as well as more advanced tertiary and quaternary structures,
including self-replicating machines. The introduction of rotational degrees of
freedom leads to a reduced variety of blocks and, most importantly, reduces the
overall size of the machines by a factor of five. In addition, we present a
universal copier-constructor, a highly efficient self-replicating mechanism
composed of approximately 40 blocks, including the restictions posed on it. The
paper also addresses evolutionary considerations, outlining several steps on
the evolutionary ladder towards more sophisticated self-replicating systems.
Finally, this study offers a clear rationale for nature's preference for
one-dimensional chains in constructing three-dimensional structures.