波动流体力学描述了细胞聚集体的运输过程

Subhadip Chakraborti, Vasily Zaburdaev
{"title":"波动流体力学描述了细胞聚集体的运输过程","authors":"Subhadip Chakraborti, Vasily Zaburdaev","doi":"arxiv-2409.03039","DOIUrl":null,"url":null,"abstract":"Biological functionality of cellular aggregates is largely influenced by the\nactivity and displacements of individual constituent cells. From a theoretical\nperspective this activity can be characterized by hydrodynamic transport\ncoefficients of diffusivity and conductivity. Motivated by the clustering\ndynamics of bacterial microcolonies we propose a model of active multicellular\naggregates and use recently developed macroscopic fluctuation theory to derive\na fluctuating hydrodynamics for this model system. Both semi-analytic theory\nand microscopic simulations show that the hydrodynamic transport coefficients\nare affected by non-equilibrium microscopic parameters and significantly\ndecrease inside of the clusters. We further find that the Einstein relation\nconnecting the transport coefficients and fluctuations breaks down in the\nparameter regime where the detailed balance is not satisfied. This study offers\nvaluable tools for experimental investigation of hydrodynamic transport in\nother systems of cellular aggregates such as tumor spheroids and organoids.","PeriodicalId":501040,"journal":{"name":"arXiv - PHYS - Biological Physics","volume":"2 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Fluctuating Hydrodynamics Describes Transport in Cellular Aggregates\",\"authors\":\"Subhadip Chakraborti, Vasily Zaburdaev\",\"doi\":\"arxiv-2409.03039\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Biological functionality of cellular aggregates is largely influenced by the\\nactivity and displacements of individual constituent cells. From a theoretical\\nperspective this activity can be characterized by hydrodynamic transport\\ncoefficients of diffusivity and conductivity. Motivated by the clustering\\ndynamics of bacterial microcolonies we propose a model of active multicellular\\naggregates and use recently developed macroscopic fluctuation theory to derive\\na fluctuating hydrodynamics for this model system. Both semi-analytic theory\\nand microscopic simulations show that the hydrodynamic transport coefficients\\nare affected by non-equilibrium microscopic parameters and significantly\\ndecrease inside of the clusters. We further find that the Einstein relation\\nconnecting the transport coefficients and fluctuations breaks down in the\\nparameter regime where the detailed balance is not satisfied. This study offers\\nvaluable tools for experimental investigation of hydrodynamic transport in\\nother systems of cellular aggregates such as tumor spheroids and organoids.\",\"PeriodicalId\":501040,\"journal\":{\"name\":\"arXiv - PHYS - Biological Physics\",\"volume\":\"2 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-09-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - PHYS - Biological Physics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2409.03039\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - PHYS - Biological Physics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2409.03039","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
引用次数: 0

摘要

细胞聚集体的生物功能在很大程度上受到单个组成细胞的活性和位移的影响。从理论角度看,这种活动可以用扩散和传导的流体动力传输系数来表征。受细菌微菌落集群动力学的启发,我们提出了一个活跃的多细胞聚集体模型,并利用最近发展起来的宏观波动理论推导出这一模型系统的波动流体力学。半解析理论和微观模拟都表明,流体动力传输系数受到非平衡微观参数的影响,并在聚集体内部显著降低。我们进一步发现,在不满足细节平衡的参数体系中,连接传输系数和波动的爱因斯坦关系被打破。这项研究为实验研究肿瘤球体和有机体等其他细胞聚集系统中的流体动力传输提供了宝贵的工具。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Fluctuating Hydrodynamics Describes Transport in Cellular Aggregates
Biological functionality of cellular aggregates is largely influenced by the activity and displacements of individual constituent cells. From a theoretical perspective this activity can be characterized by hydrodynamic transport coefficients of diffusivity and conductivity. Motivated by the clustering dynamics of bacterial microcolonies we propose a model of active multicellular aggregates and use recently developed macroscopic fluctuation theory to derive a fluctuating hydrodynamics for this model system. Both semi-analytic theory and microscopic simulations show that the hydrodynamic transport coefficients are affected by non-equilibrium microscopic parameters and significantly decrease inside of the clusters. We further find that the Einstein relation connecting the transport coefficients and fluctuations breaks down in the parameter regime where the detailed balance is not satisfied. This study offers valuable tools for experimental investigation of hydrodynamic transport in other systems of cellular aggregates such as tumor spheroids and organoids.
求助全文
通过发布文献求助,成功后即可免费获取论文全文。 去求助
来源期刊
自引率
0.00%
发文量
0
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
确定
请完成安全验证×
copy
已复制链接
快去分享给好友吧!
我知道了
右上角分享
点击右上角分享
0
联系我们:info@booksci.cn Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。 Copyright © 2023 布克学术 All rights reserved.
京ICP备2023020795号-1
ghs 京公网安备 11010802042870号
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术官方微信