{"title":"波动流体力学描述了细胞聚集体的运输过程","authors":"Subhadip Chakraborti, Vasily Zaburdaev","doi":"arxiv-2409.03039","DOIUrl":null,"url":null,"abstract":"Biological functionality of cellular aggregates is largely influenced by the\nactivity and displacements of individual constituent cells. From a theoretical\nperspective this activity can be characterized by hydrodynamic transport\ncoefficients of diffusivity and conductivity. Motivated by the clustering\ndynamics of bacterial microcolonies we propose a model of active multicellular\naggregates and use recently developed macroscopic fluctuation theory to derive\na fluctuating hydrodynamics for this model system. Both semi-analytic theory\nand microscopic simulations show that the hydrodynamic transport coefficients\nare affected by non-equilibrium microscopic parameters and significantly\ndecrease inside of the clusters. We further find that the Einstein relation\nconnecting the transport coefficients and fluctuations breaks down in the\nparameter regime where the detailed balance is not satisfied. This study offers\nvaluable tools for experimental investigation of hydrodynamic transport in\nother systems of cellular aggregates such as tumor spheroids and organoids.","PeriodicalId":501040,"journal":{"name":"arXiv - PHYS - Biological Physics","volume":"2 1","pages":""},"PeriodicalIF":0.0000,"publicationDate":"2024-09-04","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Fluctuating Hydrodynamics Describes Transport in Cellular Aggregates\",\"authors\":\"Subhadip Chakraborti, Vasily Zaburdaev\",\"doi\":\"arxiv-2409.03039\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"Biological functionality of cellular aggregates is largely influenced by the\\nactivity and displacements of individual constituent cells. From a theoretical\\nperspective this activity can be characterized by hydrodynamic transport\\ncoefficients of diffusivity and conductivity. Motivated by the clustering\\ndynamics of bacterial microcolonies we propose a model of active multicellular\\naggregates and use recently developed macroscopic fluctuation theory to derive\\na fluctuating hydrodynamics for this model system. Both semi-analytic theory\\nand microscopic simulations show that the hydrodynamic transport coefficients\\nare affected by non-equilibrium microscopic parameters and significantly\\ndecrease inside of the clusters. We further find that the Einstein relation\\nconnecting the transport coefficients and fluctuations breaks down in the\\nparameter regime where the detailed balance is not satisfied. This study offers\\nvaluable tools for experimental investigation of hydrodynamic transport in\\nother systems of cellular aggregates such as tumor spheroids and organoids.\",\"PeriodicalId\":501040,\"journal\":{\"name\":\"arXiv - PHYS - Biological Physics\",\"volume\":\"2 1\",\"pages\":\"\"},\"PeriodicalIF\":0.0000,\"publicationDate\":\"2024-09-04\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"arXiv - PHYS - Biological Physics\",\"FirstCategoryId\":\"1085\",\"ListUrlMain\":\"https://doi.org/arxiv-2409.03039\",\"RegionNum\":0,\"RegionCategory\":null,\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"\",\"JCRName\":\"\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"arXiv - PHYS - Biological Physics","FirstCategoryId":"1085","ListUrlMain":"https://doi.org/arxiv-2409.03039","RegionNum":0,"RegionCategory":null,"ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"","JCRName":"","Score":null,"Total":0}
Fluctuating Hydrodynamics Describes Transport in Cellular Aggregates
Biological functionality of cellular aggregates is largely influenced by the
activity and displacements of individual constituent cells. From a theoretical
perspective this activity can be characterized by hydrodynamic transport
coefficients of diffusivity and conductivity. Motivated by the clustering
dynamics of bacterial microcolonies we propose a model of active multicellular
aggregates and use recently developed macroscopic fluctuation theory to derive
a fluctuating hydrodynamics for this model system. Both semi-analytic theory
and microscopic simulations show that the hydrodynamic transport coefficients
are affected by non-equilibrium microscopic parameters and significantly
decrease inside of the clusters. We further find that the Einstein relation
connecting the transport coefficients and fluctuations breaks down in the
parameter regime where the detailed balance is not satisfied. This study offers
valuable tools for experimental investigation of hydrodynamic transport in
other systems of cellular aggregates such as tumor spheroids and organoids.