通过离散扩展和主方程的频谱特性确定一类类似生化生死过程的方差界限

Giovanni Pugliese Carratelli, Ioannis Leastas
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引用次数: 0

摘要

我们考虑了一类与耦合生化反应相对应的生灭类似过程,并考虑了根据反应速率量化分子物种方差的问题。特别是,我们在一个物种的形成速率非线性地依赖于另一个自发形成的物种的情况下解决了这个问题。通过利用基于牛顿级数的适当公式化展开,并结合主方程的光谱特性,我们得出了一个分析表达式,为方差提供了一个硬约束。我们证明了当熵为线性时,这个约束是精确的,数值模拟也证明了这个约束非常接近实际方差。我们还得出了物种协方差的分析表达式。
本文章由计算机程序翻译,如有差异,请以英文原文为准。
Variance bounds for a class of biochemical birth/death like processes via a discrete expansion and spectral properties of the Master equation
We consider a class of birth/death like process corresponding to coupled biochemical reactions and consider the problem of quantifying the variance of the molecular species in terms of the rates of the reactions. In particular, we address this problem in a configuration where a species is formed with a rate that depends nonlinearly on another spontaneously formed species. By making use of an appropriately formulated expansion based on the Newton series, in conjunction with spectral properties of the master equation, we derive an analytical expression that provides a hard bound for the variance. We show that this bound is exact when the propensities are linear, with numerical simulations demonstrating that this bound is also very close to the actual variance. An analytical expression for the covariance of the species is also derived.
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