{"title":"茉莉花科（油橄榄科，唇形科）叶绿体基因组比较分析","authors":"Thi Thanh Nga Le, Hoang Dang Khoa Do","doi":"10.1007/s40415-024-01040-9","DOIUrl":null,"url":null,"abstract":"<p><i>Jasminum</i> L.<i>,</i> a genus of <i>Oleaceae</i>, contains different species that are often used in medicinal and industrial fields. Genomic data of <i>Jasminum</i> are essential for elucidating the evolutionary history and mining DNA-based applications. Therefore, in this study, the complete chloroplast genomes of <i>Jasminum nervosum</i> Lour. and <i>Jasminum multiflorum</i> (Burm.f.) Andrews were sequenced and characterized based on the next-generation sequencing method. Consequently, typical quadripartite chloroplast genomes of 162,855 bp and 163,248 bp were completed for <i>J. multiflorum</i> and <i>J. nervosum,</i> respectively. Comparative genomic analysis among chloroplast genomes of tribe <i>Jasmineae</i> revealed different numbers of repeats, inversion of <i>pafI-pafII</i> region, loss of <i>accD</i>, and loss of <i>clpP</i> introns. Phylogenetic analysis revealed the monophyly of five tribes of <i>Oleaceae</i>. <i>J. nervosum</i> was closely related to <i>J. multiflorum</i> formed compared to other <i>Jasminum</i> taxa. The newly completed chloroplast genomes of <i>Jasminum</i> species enlarged the genomic data and provided useful information for further studies on genomic evolution, population genetics, and phylogeny of <i>Oleaceae</i>.</p>","PeriodicalId":9140,"journal":{"name":"Brazilian Journal of Botany","volume":"5 1","pages":""},"PeriodicalIF":1.4000,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":"0","resultStr":"{\"title\":\"Comparative chloroplast genome analysis of tribe Jasmineae (Oleaceae, Lamiales)\",\"authors\":\"Thi Thanh Nga Le, Hoang Dang Khoa Do\",\"doi\":\"10.1007/s40415-024-01040-9\",\"DOIUrl\":null,\"url\":null,\"abstract\":\"<p><i>Jasminum</i> L.<i>,</i> a genus of <i>Oleaceae</i>, contains different species that are often used in medicinal and industrial fields. Genomic data of <i>Jasminum</i> are essential for elucidating the evolutionary history and mining DNA-based applications. Therefore, in this study, the complete chloroplast genomes of <i>Jasminum nervosum</i> Lour. and <i>Jasminum multiflorum</i> (Burm.f.) Andrews were sequenced and characterized based on the next-generation sequencing method. Consequently, typical quadripartite chloroplast genomes of 162,855 bp and 163,248 bp were completed for <i>J. multiflorum</i> and <i>J. nervosum,</i> respectively. Comparative genomic analysis among chloroplast genomes of tribe <i>Jasmineae</i> revealed different numbers of repeats, inversion of <i>pafI-pafII</i> region, loss of <i>accD</i>, and loss of <i>clpP</i> introns. Phylogenetic analysis revealed the monophyly of five tribes of <i>Oleaceae</i>. <i>J. nervosum</i> was closely related to <i>J. multiflorum</i> formed compared to other <i>Jasminum</i> taxa. The newly completed chloroplast genomes of <i>Jasminum</i> species enlarged the genomic data and provided useful information for further studies on genomic evolution, population genetics, and phylogeny of <i>Oleaceae</i>.</p>\",\"PeriodicalId\":9140,\"journal\":{\"name\":\"Brazilian Journal of Botany\",\"volume\":\"5 1\",\"pages\":\"\"},\"PeriodicalIF\":1.4000,\"publicationDate\":\"2024-09-05\",\"publicationTypes\":\"Journal Article\",\"fieldsOfStudy\":null,\"isOpenAccess\":false,\"openAccessPdf\":\"\",\"citationCount\":\"0\",\"resultStr\":null,\"platform\":\"Semanticscholar\",\"paperid\":null,\"PeriodicalName\":\"Brazilian Journal of Botany\",\"FirstCategoryId\":\"99\",\"ListUrlMain\":\"https://doi.org/10.1007/s40415-024-01040-9\",\"RegionNum\":4,\"RegionCategory\":\"生物学\",\"ArticlePicture\":[],\"TitleCN\":null,\"AbstractTextCN\":null,\"PMCID\":null,\"EPubDate\":\"\",\"PubModel\":\"\",\"JCR\":\"Q3\",\"JCRName\":\"PLANT SCIENCES\",\"Score\":null,\"Total\":0}","platform":"Semanticscholar","paperid":null,"PeriodicalName":"Brazilian Journal of Botany","FirstCategoryId":"99","ListUrlMain":"https://doi.org/10.1007/s40415-024-01040-9","RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":null,"EPubDate":"","PubModel":"","JCR":"Q3","JCRName":"PLANT SCIENCES","Score":null,"Total":0}
引用次数: 0
摘要
茉莉属（Jasminum L.）是油茶科（Oleaceae）的一个属，包含不同的物种，这些物种通常用于医药和工业领域。茉莉花的基因组数据对于阐明其进化历史和挖掘基于 DNA 的应用至关重要。因此，本研究采用新一代测序方法对神经茉莉（Jasminum nervosum Lour.）和多花茉莉（Jasminum multiflorum (Burm.f.) Andrews）的叶绿体基因组进行了测序和鉴定。结果，多花茉莉（J. multiflorum）和神经茉莉（J. nervosum）分别完成了 162,855 bp 和 163,248 bp 的典型四方叶绿体基因组。对茉莉科植物叶绿体基因组的比较分析表明，它们的重复数目、pafI-pafII 区域的反转、accD 的缺失和 clpP 内含子的缺失各不相同。系统进化分析表明油茶科的五个支系为单系。与其他茉莉类群相比，神经茉莉（J. nervosum）与多花茉莉（J. multiflorum）亲缘关系密切。新完成的茉莉属植物叶绿体基因组扩大了基因组数据，为进一步研究油茶科植物的基因组进化、种群遗传学和系统发育提供了有用信息。
Comparative chloroplast genome analysis of tribe Jasmineae (Oleaceae, Lamiales)
Jasminum L., a genus of Oleaceae, contains different species that are often used in medicinal and industrial fields. Genomic data of Jasminum are essential for elucidating the evolutionary history and mining DNA-based applications. Therefore, in this study, the complete chloroplast genomes of Jasminum nervosum Lour. and Jasminum multiflorum (Burm.f.) Andrews were sequenced and characterized based on the next-generation sequencing method. Consequently, typical quadripartite chloroplast genomes of 162,855 bp and 163,248 bp were completed for J. multiflorum and J. nervosum, respectively. Comparative genomic analysis among chloroplast genomes of tribe Jasmineae revealed different numbers of repeats, inversion of pafI-pafII region, loss of accD, and loss of clpP introns. Phylogenetic analysis revealed the monophyly of five tribes of Oleaceae. J. nervosum was closely related to J. multiflorum formed compared to other Jasminum taxa. The newly completed chloroplast genomes of Jasminum species enlarged the genomic data and provided useful information for further studies on genomic evolution, population genetics, and phylogeny of Oleaceae.
期刊介绍：
The Brazilian Journal of Botany is an international journal devoted to publishing a wide-range of research in plant sciences: biogeography, cytogenetics, ecology, economic botany, physiology and biochemistry, morphology and anatomy, molecular biology and diversity phycology, mycology, palynology, and systematics and phylogeny.
The journal considers for publications original articles, short communications, reviews, and letters to the editor.
Manuscripts describing new taxa based on morphological data only are suitable for submission; however information from multiple sources, such as ultrastructure, phytochemistry and molecular evidence are desirable.
Floristic inventories and checklists should include new and relevant information on other aspects, such as conservation strategies and biogeographic patterns.
The journal does not consider for publication submissions dealing exclusively with methods and protocols (including micropropagation) and biological activity of extracts with no detailed chemical analysis.
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